Sequence
atgc intronic sequence ATGC exonic sequencegtatctaagaaagttggccgattttctgtgctctgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 5
------------------------------------------------------------------------------------------gtatctaagaaagttggccgat-tttctgtgctctgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
| ||||| ||| ||||| || ||| ||| |||| || ||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||
gtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAG
upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 3'ss of exon 5
---------------------------------------gtatctaagaaagttggccgattttctgtgctctgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
| || || || || | | | ||| || || || |||| ||||| ||||| ||||||||||| |||||||||| || ||||| |||||||||
gtgagattttcctctactatgcaaagtttctgatggttagcgactgaggaaaatgatttagtct-tgt-ctatgcagACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAAGAAG
upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 3'ss of exon 5
------------------------------------------------------gtatctaagaaagttggccgattttctgtgctc---tgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
| |||| ||| | |||| | ||| |||| ||||| ||||| ||||||||||| |||||||||| ||| |||||||||||||||
gtaaggttttttcttgtgtttcatcacattctgactgcaaagttatggttttttagactcaagaggtttgattttagtcctgtctttgttcttagACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAG
upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------------------------------gtatctaagaaagttggccgattttc--tgtgctctgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
| | | ||| | | | ||| | ||||||| ||||||||||||||||| || |||||||| |||| ||||| ||||| ||||||
acatgttggtgctagaaatgggtatagcttagaaacgtgccgatcaaacattgtttactatttcttgtgcttgttaattaaatgttatcgtgtcatccagTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAG
upper sequence: GRMZM2G376619_T01 (Zea mays), 3'ss of exon 6
lower sequence: PP1S62_224V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------------------------gtatctaagaaagttggccgattttctgtgctctgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
| | | | | || || | | | ||||||| ||||| ||||||||||||||| |||| ||||||| ||||| ||||||||||||
ggaattgtttcatacttgcaacgattgttagtgatatgccatagttcttgaatacggctcggatgaattctggctctaacttagttactctccattacagTCTGAAGATGAGCGTGAAATGTGTGCACGGACCATCTACTGTACAAATATTGACAAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatctaagaaagttggccgattttctgtgctctgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
ttttctgt CT-rich tract
tatctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatctaagaaagttggccgattttctgtgctctgtagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTACACAAACATTGACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG