1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtctatcaagattccccccttttccataagcttccttcttgctgcgctgaggtacacttgagcacagttgacatgtttaatcgcaattttgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTGAAGAAAGGATATGGAACGGAGTGTGACTG
species | Zea mays |
transcript | GRMZM2G375904_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTG GCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTGEST: gi|33285627|gb|CF075422.1|CF075422
genomic: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTGgtaagtagtg ... tgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTG
EST: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTG GCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTGEST: gi|31628455|gb|CD526616.1|CD526616
genomic: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTGgtaagtagtg ... tgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTG
EST: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTG GCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTGEST: gi|211127917|gb|FL461340.1|FL461340
genomic: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTGgtaagtagtg ... tgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTG
EST: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTG GCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTGEST: gi|67018726|gb|CO447475.1|CO447475
genomic: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTGgtaagtagtg ... tgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTG
EST: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTG GCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTG
genomic: GTACACAGCAGGAGCAATTGTCACACTGGCAAAAGAACCGTCGGATGTTGgtaagtagtg ... tgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTG
cgctgaggtacacttgagcacagttgacatgtttaatcgcaattttgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTGAAGAAAGGATATGGAACGGAGTGTGACTG
gtttaat putative branch site (score: 4)
atgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctatcaagattccccccttttccataagcttccttcttgctgcgctgaggtacacttgagcacagttgacatgtttaatcgcaattttgggacacagGCATACTCAACAGTCGGTACACCTGATTATATTGCTCCAGAAGTGCTACTGAAGAAAGGATATGGAACGGAGTGTGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA