1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttaacaaagctatgtaactcaccatagagaaaacaacttatgtagcaaagtggtatcgatcataactttttatgtacgcttgtattcaactgctttcagCATTATTGGGGGATTCTTCATAATTGCTGGCCTATATCTAGTTACGTGGGCTCGCTACAATGAAGCACAACGGGCAACGACAGATGATTATTTGGACTCA
species | Zea mays |
transcript | GRMZM2G370510_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCACCGTCCTCTCAACTGTTTTCCTTGGTGCCCCAGTTTACACCGGAAG CATTATTGGGGGATTCTTCATAATTGCTGGCCTATATCTAGTTACGTGGGCEST: gi|74233642|gb|DT641556.1|DT641556
genomic: TCCACCGTCCTCTCAACTGTTTTCCTTGGTGCCCCAGTTTACACCGGAAGgtttgattgc ... ctgctttcagCATTATTGGGGGATTCTTCATAATTGCTGGCCTATATCTAGTTACGTGGGC
EST: TCCACCGTCCTCTCAACTGTTTTCCTTGGTGCCCCAGTTTACACCGGAAG CATTATTGGGGGATTCTTCATAATTGCTGGCCTATATCTAGTTACGTGGGC
genomic: TCCACCGTCCTCTCAACTGTTTTCCTTGGTGCCCCAGTTTACACCGGAAGgtttgattgc ... ctgctttcagCATTATTGGGGGATTCTTCATAATTGCTGGCCTATATCTAGTTACGTGGGC
gcaaagtggtatcgatcataactttttatgtacgcttgtattcaactgctttcagCATTATTGGGGGATTCTTCATAATTGCTGGCCTATATCTAGTTACGTGGGCTCGCTACAATGAAGCACAACGGGCAACGACAGATGATTATTTGGACTCA
tcataac putative branch site (score: 2)
ctgctttc putative PPT
atcataactttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaacaaagctatgtaactcaccatagagaaaacaacttatgtagcaaagtggtatcgatcataactttttatgtacgcttgtattcaactgctttcagCATTATTGGGGGATTCTTCATAATTGCTGGCCTATATCTAGTTACGTGGGCTCGCTACAATGAAGCACAACGGGCAACGACAGATGATTATTTGGACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- taacaaa
- - - - - - - - - ctcacca
- - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - -tgtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtat