1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaaagcatgaatatttatttttgtatgctcagctagtgtctgcttgtagttatgacttatctgattatactgtaccgacgttgctatttcttcactgcagGTCTTAAAAAAGAAGCCAGATTTCCGCCGCAAGCCTTGGTCAAACATTACTTCGAGTGCAAAAGATTTTGTACAAAAATTACTAGTTAAGGATCCCCGTG
species | Zea mays |
transcript | GRMZM2G365035_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAGACGACCATTCTGGGACAAAWCASAAGATGGGATATTTAAAGAG GTCTTAAAAAAGAAGCCAGATTTCCGCCGCAAGCCTTGGTCAAACATTACTEST: gi|18660455|gb|BM500871.1|BM500871
genomic: GTGGAAGACGACCATTCTGGGACAAAACAGAAGATGGGATATTTAAAGAGgttaacatcc ... ttcactgcagGTCTTAAAAAAGAAGCCAGATTTCCGCCGCAAGCCTTGGTCAAACATTACT
EST: GTGGAAGACGACC-T-CTGGGACAAAACAGAAGATGGGATATTTAAAGAG GTCTTAAAAAAGAAGCCAGATTTCCGCCGCAAGCCTTGGTCAAACATTACT
genomic: GTGGAAGACGACCATTCTGGGACAAAACAGAAGATGGGATATTTAAAGAGgttaacatcc ... ttcactgcagGTCTTAAAAAAGAAGCCAGATTTCCGCCGCAAGCCTTGGTCAAACATTACT
gtagttatgacttatctgattatactgtaccgacgttgctatttcttcactgcagGTCTTAAAAAAGAAGCCAGATTTCCGCCGCAAGCCTTGGTCAAACATTACTTCGAGTGCAAAAGATTTTGTACAAAAATTACTAGTTAAGGATCCCCGTG
atctgat putative branch site (score: 113)
ctatttcttc putative PPT
tgattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagcatgaatatttatttttgtatgctcagctagtgtctgcttgtagttatgacttatctgattatactgtaccgacgttgctatttcttcactgcagGTCTTAAAAAAGAAGCCAGATTTCCGCCGCAAGCCTTGGTCAAACATTACTTCGAGTGCAAAAGATTTTGTACAAAAATTACTAGTTAAGGATCCCCGTG
- - gcatgaa
- - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - -gctagtg
- - - - - - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgttgct