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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcttcctctggctgctcccaagccttcctttgatgatcgtaggttcattcagtgctgcattctgcgagttttcttctcaagtttcctttgaatgcgttttgcagGGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGTGCATGGTTGGTTTGGGAAAGCGAACGGACTAATCAGTTTTAGAATGCTT

Basic information

species Zea mays
transcript GRMZM2G357972_T01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37386622|gb|CF630499.1|CF630499
EST:     ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGA                         GGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
genomic: ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGAgtatgttctt ... cgttttgcagGGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
EST: gi|71766444|gb|DR964381.1|DR964381
EST:     ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGA                         GGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
genomic: ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGAgtatgttctt ... cgttttgcagGGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
EST: gi|32796222|gb|CD948458.1|CD948458
EST:     ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGA                         GGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGCAAGCAGCGAT
genomic: ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGAgtatgttctt ... cgttttgcagGGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
EST: gi|166553572|gb|EG289391.1|EG289391
EST:     ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGA                         GGACGCGAGGCAAAGCTGC
genomic: ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGAgtatgttctt ... cgttttgcagGGACGCGAGGCAAAGCTGC
EST: gi|5915516|gb|AW053157.1|AW053157
EST:     ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGA                         GGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
genomic: ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGAgtatgttctt ... cgttttgcagGGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
EST: gi|12968346|gb|BG265292.1|BG265292
EST:     ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGA                         GGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT
genomic: ATTTGAATGCCTGTGCGGAAGCAGATACTGCCGTGGTAGAAAGCATTCGAgtatgttctt ... cgttttgcagGGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgctgcattctgcgagttttcttctcaagtttcctttgaatgcgttttgcagGGACGCGAGGCAAAGCTGCTTCGAAGTGAAGTGTTGACTGAAAGCAGCGGTGCATGGTTGGTTTGGGAAAGCGAACGGACTAATCAGTTTTAGAATGCTT
                   ttttctt  TA-rich tract