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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagaaacagaacagatagagctggaaagagaggataatggtgtggttttttttatttctgaaatggctctccggtgctgaatctttgcatgccatgtagGTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAGGGTTTGCCACAGAACTCCATTTTCATGAGCATCCTCGGTGGCACCATCA

Basic information

species Zea mays
transcript GRMZM2G352695_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352695_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g42020.1 (Oryza sativa), 3'ss of exon 6
-------------------------------------------------------------------------------------caagaaacagaacagata-gagctggaaagagaggataatggtgtggttttttt----tatttctgaaatggctctccggtgctgaatctttgcatgccatgtagGTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAGGGTTTGCCACAGAACTCCATTTTCATGAGCATCCTCGGTGGCACCATCA
                                                                                     ||   || || |    |  | | | |   | | |  |||   | |  ||   ||    ||| | |  |||   | ||| ||  | | |  ||||||||  ||||||| |||||||| |||||||| ||||| |||||||| ||||| ||| ||| |||  || ||  ||||||||||||| |  |  |||||   ||||||||| 
gtatgttagcacttgcaaaataccattcttttgtactggtaaatttaggagcaaaaattatctctttaatatggaagagatatatcagacaagaggatctgtgtgtgtttgtgtgtgtgtgtaactttatccttgcattgccatatctttttaatatgt-tccagttttcattaattgcatgctttgtagGTGTTCAATGAAATAAGCTCAAGAGAGATGGAGGACATCAACGTTCTGAGGGGCATGGCAGGGAACTCCATTTTCCTTGGTGTCCTCACCGGCACCATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013813|gb|DT940983.1|DT940983
EST:     CTAATACTGTTCTAAATACAATCATATTCAACACTTTCGTATTCTGCCAG                         GTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAG
genomic: CTAATACTGTTCTAAATACAATCATATTCAACACTTTCGTATTCTGCCAGgtaaatcaac ... tgccatgtagGTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAG
EST: gi|211018965|gb|FL013397.1|FL013397
EST:     CTAATACTGTTCTAAATACAATCATATTCAACACTTTCGTATTCTGCCAG                         GTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAG
genomic: CTAATACTGTTCTAAATACAATCATATTCAACACTTTCGTATTCTGCCAGgtaaatcaac ... tgccatgtagGTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAG
EST: gi|89755713|gb|DY686032.1|DY686032
EST:     CTAATACTGTTCTAAATACAATCATATTCAACACTTTCGTATTCTGCCAG                         GTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAG
genomic: CTAATACTGTTCTAAATACAATCATATTCAACACTTTCGTATTCTGCCAGgtaaatcaac ... tgccatgtagGTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttttatttctgaaatggctctccggtgctgaatctttgcatgccatgtagGTTTTCAATGAGATAAGCTCGAGAGACATGGAGGAGATCAATGTTTTGAAGGGTTTGCCACAGAACTCCATTTTCATGAGCATCCTCGGTGGCACCATCA
     ttttatttctgaaat  TA-rich tract