1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgctgatatttgatcatcttgatacatcacagtaaatacattgaatgcattgcttttctaactattcattgtacccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTTTCTACT
species | Zea mays |
transcript | GRMZM2G351582_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTTEST: gi|149027382|gb|EE046514.2|EE046514
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTT
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCCTCA-CGTGGAACACTEST: gi|149058050|gb|EE156735.2|EE156735
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGC-TCAACGTGGAACACT
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTTEST: gi|87152120|gb|DY396909.1|DY396909
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTT
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCAGAGCTCGACTTTGAGATCCCTCCAGEST: gi|211353775|gb|FL303049.1|FL303049
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAG
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTC-AGAGCTCGEST: gi|18450704|gb|BM428982.1|BM428982
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCG
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCAGAGCTCGACTTTGAGATCCCTCCAGEST: gi|78022867|gb|DV491254.1|DV491254
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAG
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCGGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTTEST: gi|26456768|gb|CA828351.1|CA828351
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTT
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAACTCAACGGGGAAACAATEST: gi|148996196|gb|EE035468.2|EE035468
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGG-AAC-AC
EST: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAG ATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTT
genomic: ATGCTGAATCGTCAGGTCGTGAAGTCTGATTCAGCGACTATCAAGgtatgctgat ... ccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTT
cagtaaatacattgaatgcattgcttttctaactattcattgtacccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTTTCTACT
ttctaac putative branch site (score: 97)
cccatct putative PPT
aatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctgatatttgatcatcttgatacatcacagtaaatacattgaatgcattgcttttctaactattcattgtacccatctgcagATTCCAGAGCTCGACTTTGAGATCCCTCCAGAAGCTCAACGTGGAACACTTTCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA