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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaaatttggtatccattcttctttcgaaataccacggcttcatgtctccaatatgcctaccagcctaccaggaatcatgagtcatgacactgcacttttttgccgcagGTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAATACTGCGGATGATCCGCACATGAGAAAACCTGACATTTCGAAGGCTAAAT

Basic information

species Zea mays
transcript GRMZM2G347717_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347717_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g17230.1 (Oryza sativa), 3'ss of exon 6
------gtctgaaatttggtatccattcttctttcgaaataccacggcttcatgtctccaatatgcctaccagcctaccaggaatcatgagtcatgacactgcacttttttgccgcagGTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAATACTGCGGATGATCCGCACATGAGAAAACCTGACATTTCGAAGGCTAAAT
        || | | ||   |||||    || | | |         |    |||  |    |          || | | |      |  ||  || |   |||    |  | | | |||| || ||||| ||||| |||||| ||||   ||| |||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| ||||
gttcggccctcatacttcaaatccaactatcctgcaatccttgtatgaacaatgctttgggttcttgcctgggctttctactttctacaagcaatcatg-tgcctgctacttctgtagGTAGTGAAAGAGACAATTGACCCAAGTGCTCGTGTTGAGTTCAAACCCAATACTGCAGATGATCCACACATGAGAAAACCAGACATCTCGAAGGCCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71759798|gb|DR957735.1|DR957735
EST:     AATTTACAATGCGGGAGCTTGCACAG                         GTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAAT
genomic: AATTTACAATGCTGGAGCTTGCACAGgtctgaaatt ... tttgccgcagGTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAAT
EST: gi|60395665|gb|DN228535.1|DN228535
EST:     CATTCAACTTGGGGAATCCTGGAGAATTTACAATGCTGGAGCTTGCACAG                         GTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAAT
genomic: CATTCAACTTGGGGAATCCTGGAGAATTTACAATGCTGGAGCTTGCACAGgtctgaaatt ... tttgccgcagGTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAAT
EST: gi|71759909|gb|DR957846.1|DR957846
EST:     CATTCAACTTGGGGAATCCTGGAGAATTTACAATGCTGGAGCTTGCACAG                         GTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAAT
genomic: CATTCAACTTGGGGAATCCTGGAGAATTTACAATGCTGGAGCTTGCACAGgtctgaaatt ... tttgccgcagGTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctaccagcctaccaggaatcatgagtcatgacactgcacttttttgccgcagGTGGTAAAAGAAACAATCGACCCAGGTGCATCTGTCGAGTTCAAACCCAATACTGCGGATGATCCGCACATGAGAAAACCTGACATTTCGAAGGCTAAAT
                                         cttttttgcc  CT-rich tract
                                        actttttt  TA-rich tract