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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatataggatccacccatgagtctgaccattgtagtttggctaacctgatctaaaaaataaacaaactcataatgcaaatgcttttgtcggattgcagGTGAGCTAGAGGAAAGCATTGCAGAGCTTGAGGAAAGTCAAAGGAAGTTGGTTGTGCTCCAGTTGCAGAGGCATGGTTCTGTAATGGATGCATCTGGGGC

Basic information

species Zea mays
transcript GRMZM2G341271_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G341271_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g41590.1 (Oryza sativa), 3'ss of exon 5
tccatataggatccacccatgagtctgaccattgtagtttgg-ctaacctgatct-aaaaaataaacaaactcataatgcaaatgcttttgtcggattgcagGTGAGCTAGAGGAAAGCATTGCAGAGCTTGAGGAAAGTCAAAGGAAGTTGGTTGTGCTCCAGTTGCAGAGGCATG---GTTCTGTAATGGATGCATCTGGGGC
   | || | ||     ||     |    | ||| | |||||  |    |  |||   | |  |||  |||   ||||||| || | | ||| | |||  ||||||||||||||||||||| ||||||||||||||||| |   | ||||||| ||| ||||||||||| | |  ||   | ||  | ||| |  ||||||    
--aaaattgtattttggcacataccctgactttgcattttggattggattactcttgcacaccaaaacaacctgtaatgcacattcatatgttgtattttagGTGAGCTAGAGGAAAGCATGGCAGAGCTTGAGGAAAGCCGTCGAAAGTTGGCTGTTCTCCAGTTGCAAACGGGTGGAGGCTCACTGATGAACACATCTGC---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctgatctaaaaaataaacaaactcataatgcaaatgcttttgtcggattgcagGTGAGCTAGAGGAAAGCATTGCAGAGCTTGAGGAAAGTCAAAGGAAGTTGGTTGTGCTCCAGTTGCAGAGGCATGGTTCTGTAATGGATGCATCTGGGGC
                                      cttttgtc  CT-rich tract
        taaaaaataaacaaac  TA-rich tract