1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagccgaattgtcctttgggttgatttgttcatatcaccatatcgagttggttccagtatttcccatcaacacatgaccaacatttaattctgaaatggagacatgaagtaattttttctaatgtttgttttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGTAA
species | Zea mays |
transcript | GRMZM2G337425_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCEST: gi|78083978|gb|DV512371.1|DV512371
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTC
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|91048354|gb|EB158772.1|EB158772
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCCGGCA-TGAGGEST: gi|78083979|gb|DV512372.1|DV512372
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCC-GGCAATGAGG
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|78109926|gb|DV528341.1|DV528341
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGGTTCTTCAACTGGGGTC-GGCAATGAGGEST: gi|18164717|gb|BM334556.1|BM334556
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGG-TCCGGCAATGAGG
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|148928861|gb|EC873779.2|EC873779
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: TCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|76288198|gb|DV027766.1|DV027766
genomic: TCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: TCAA-TATAAAGTTCAGGCACAACAGAGGCATCCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCEST: gi|18166650|gb|BM336489.1|BM336489
genomic: TCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCC-TGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCC
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|71760470|gb|DR958407.1|DR958407
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTTCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|86467324|gb|DY233694.1|DY233694
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: CAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|76288197|gb|DV027765.1|DV027765
genomic: CAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGAEST: gi|78085072|gb|DV513465.1|DV513465
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
EST: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGA
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGT
ttaattctgaaatggagacatgaagtaattttttctaatgtttgttttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGTAA
ttctaat putative branch site (score: 2)
tttgttttcc CT-rich tract
taattttttctaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagccgaattgtcctttgggttgatttgttcatatcaccatatcgagttggttccagtatttcccatcaacacatgaccaacatttaattctgaaatggagacatgaagtaattttttctaatgtttgttttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAGGTAA
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