1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcaaaatttagagcactgggcttaaagaaccttttgcaccttctttgcattatgctaaaaaaggtatttaagattgttttgctctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAGCTATCGAAACCACTTCAGATAAGCTGCAAGCTCAACAATGCCGCATGTA
species | Zea mays |
transcript | GRMZM2G336858_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAG GCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAGEST: gi|211411216|gb|FL076933.1|FL076933
genomic: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAGgtcaaaattt ... tctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAG
EST: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAG GCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAEST: gi|211411222|gb|FL076939.1|FL076939
genomic: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAGgtcaaaattt ... tctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCA
EST: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAG GCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAGEST: gi|211411220|gb|FL076937.1|FL076937
genomic: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAGgtcaaaattt ... tctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAG
EST: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAG GCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAGEST: gi|14191396|gb|BG833626.1|BG833626
genomic: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAGgtcaaaattt ... tctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAG
EST: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAG GCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAG
genomic: TGTGGTTTAAAATTGGCAAGTATGCCAGGGCTTCTAAGAGATATGAAAAGgtcaaaattt ... tctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAG
accttctttgcattatgctaaaaaaggtatttaagattgttttgctctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAGCTATCGAAACCACTTCAGATAAGCTGCAAGCTCAACAATGCCGCATGTA
tgctaaa putative branch site (score: 159)
ttgttttgctctttct putative PPT
taaaaaaggtatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaaatttagagcactgggcttaaagaaccttttgcaccttctttgcattatgctaaaaaaggtatttaagattgttttgctctttctcagGCTTTGAGCTTTGTCGAGTACGATAGCTCCTTCACTGAAGAAGAGAAGCAGCTATCGAAACCACTTCAGATAAGCTGCAAGCTCAACAATGCCGCATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA