1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagaatgcctttttttttcttcttgaacttccatttaaagttttgaatacacgagaagattgggagtagtttctaacttcaaaatgctgcttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG
species | Zea mays |
transcript | GRMZM2G330650_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|87157738|gb|DY402527.1|DY402527
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: ACAAACTGTTGAGACTGGAGCTCAAACTTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|60338704|gb|DN205677.1|DN205677
genomic: ACAAACTGTTGAGACTGGAGCTCAAAC-TGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|110510919|gb|EE019261.1|EE019261
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|7135591|gb|AW498164.1|AW498164
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: AAACTGTTGAGACTGGAGCTCAAACTGCTGCGCCATTAACNCAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|18166041|gb|BM335880.1|BM335880
genomic: AAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: AGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|149097830|gb|EE183757.2|EE183757
genomic: AGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|50334133|gb|CO529259.1|CO529259
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|89754547|gb|DY685289.1|DY685289
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGGGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCCEST: gi|76286033|gb|DV025601.1|DV025601
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|76913444|gb|DV165140.1|DV165140
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
aatacacgagaagattgggagtagtttctaacttcaaaatgctgcttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG
ttctaac putative branch site (score: 123)
ctgctttttt putative PPT
ttttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaatgcctttttttttcttcttgaacttccatttaaagttttgaatacacgagaagattgggagtagtttctaacttcaaaatgctgcttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- gaatgcc
- - - - - - - - - cttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctgc