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gttacttcccttactatacacccttgtcctgtttgccatggcaaaatttacaagacattcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA
species | Zea mays |
transcript | GRMZM2G330650_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|60396385|gb|DN229254.1|DN229254
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|32866170|gb|CF005852.1|CF005852
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGTTTTTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|71774531|gb|DR972409.1|DR972409
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|50338100|gb|CO533226.1|CO533226
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|76286033|gb|DV025601.1|DV025601
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|21810005|gb|BQ668323.1|BQ668323
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|71442678|gb|DR823728.1|DR823728
genomic: GCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|60396054|gb|DN228924.1|DN228924
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|211141939|gb|FL417378.1|FL417378
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|211019324|gb|FL371811.1|FL371811
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGEST: gi|7135269|gb|AW498001.1|AW498001
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTG
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|78074383|gb|DV502817.1|DV502817
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|78122352|gb|DV540736.1|DV540736
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|32827094|gb|CD966772.1|CD966772
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAEST: gi|60337886|gb|DN204859.1|DN204859
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|110510919|gb|EE019261.1|EE019261
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGACCCAAAGGGACCAACCAGATCAAGCTATTGAACGTTCAAAAAGG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|148961350|gb|EE012080.2|EE012080
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACAEST: gi|76019098|gb|DT946268.1|DT946268
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
EST: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATG GTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
genomic: GAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGgttacttccc ... attcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACA
tactatacacccttgtcctgtttgccatggcaaaatttacaagacattcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA
cccttac putative branch site (score: 3)
cattctt putative PPT
aaaatttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacttcccttactatacacccttgtcctgtttgccatggcaaaatttacaagacattcttgtagGTCGTAGCACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC