Sequence
atgc intronic sequence ATGC exonic sequence...cttccgaaaccaacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtttctaagaaagttggttgattttctgtgctctgcagTCTGACGATGAATGTGAAATGTGTGCTAGGACTATCTACTGCACAAACATTGACAAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G324221_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 5
------------------cttccgaaaccaacatg---cttgtcttaagttcatggctcaatg---ttcatgc---tctatctg-atatggtttctaagaaagttggttgat-tttctgtgctctgcagTCTGACGATGAATGTGAAATGTGTGCTAGGACTATCTACTGCACAAACATTGACAAGAAG
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gtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAG
upper sequence: GRMZM2G324221_T03 (Zea mays), 3'ss of exon 6
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 3'ss of exon 5
cttccgaaaccaacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtttctaagaaagttggttgattttctgtgctctgcagTCTGACGATGAATGTGAAATGTGTGCTAGGACTATCTACTGCACAAACATTGACAAGAAG
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-----------------------gtgagattttcctctactatgcaaagtttctgatggttagcgactgaggaaaatgatttagtct-tgt-ctatgcagACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAAGAAG
upper sequence: GRMZM2G324221_T03 (Zea mays), 3'ss of exon 6
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 3'ss of exon 5
cttccgaaaccaacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtttctaagaaagttggttgattttctgtgctctgcagTCTGACGATGAATGTGAAATGTGTGCTAGGACTATCTACTGCACAAACATTGACAAGAAG
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-gtaaggttttttcttgtgtttcatcacattctgactgcaaagttatggttttttagactcaagaggtttgatt-ttagtc--ctgtctttgttct-tagACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAG
upper sequence: GRMZM2G324221_T03 (Zea mays), 3'ss of exon 6
lower sequence: PP1S62_224V6.1 (Physcomitrella patens), 3'ss of exon 5
------cttccgaaaccaacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtttctaagaaagttggttgattttctgtgctctgcagTCTGACGATGAATGTGAAATGTGTGCTAGGACTATCTACTGCACAAACATTGACAAGAAG
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ggaattgtttcatacttgcaacgattgt--tagtgatatgccatagttcttgaatacggctcgg-atgaattctggct---ctaacttagttactctccattacagTCTGAAGATGAGCGTGAAATGTGTGCACGGACCATCTACTGTACAAATATTGACAAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgctctatctgatatggtttctaagaaagttggttgattttctgtgctctgcagTCTGACGATGAATGTGAAATGTGTGCTAGGACTATCTACTGCACAAACATTGACAAGAAG
ttttctgt CT-rich tract
ttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttccgaaaccaacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtttctaagaaagttggttgattttctgtgctctgcagTCTGACGATGAATGTGAAATGTGTGCTAGGACTATCTACTGCACAAACATTGACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - accaaca
- - - - - - - -tgcttgt
- - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctg