1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
atatcctccccccccaccaaaaaatgtttactttatattagaatatctctcatgattgcatctttactacttgcatactaacagacatgcacagaaaaaaaaacatgttgttcttgacaaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGCAAGTTTACATCCAGTCAAATCAACATTGGATGTGCTAGAGTTGATGGAA
species | Zea mays |
transcript | GRMZM2G323622_T01 |
intron # | 6 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TACAACGCACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAG ACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGCEST: gi|211353939|gb|FL310943.1|FL310943
genomic: TACAACGAACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAGatatcctccc ... aaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGC
EST: -ACAACGAACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAG ACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGCEST: gi|38687291|gb|CK144322.1|CK144322
genomic: TACAACGAACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAGatatcctccc ... aaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGC
EST: TACAACGAACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAG ACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGCEST: gi|211021362|gb|FL343609.1|FL343609
genomic: TACAACGAACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAGatatcctccc ... aaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGC
EST: TACAACGAACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAG ACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGC
genomic: TACAACGAACAAGTGCGGGATCTTTTATCAAATGATATTGCACAAAAAAGatatcctccc ... aaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGC
catactaacagacatgcacagaaaaaaaaacatgttgttcttgacaaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGCAAGTTTACATCCAGTCAAATCAACATTGGATGTGCTAGAGTTGATGGAA
gttcttgac putative branch site
aaaaaaaaacatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcctccccccccaccaaaaaatgtttactttatattagaatatctctcatgattgcatctttactacttgcatactaacagacatgcacagaaaaaaaaacatgttgttcttgacaaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAACGGACTTGTTGTCCCTGATGCAAGTTTACATCCAGTCAAATCAACATTGGATGTGCTAGAGTTGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA