Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatactctctatatccagattttagagggcttggttattttggtgccaaatacttatattttgcttgatgacaagctaatttactgatttttccatcctgaaaaagtatttgttattatatgaccttctggtgtttttggtaaactttttttctcatttttttgccaccctaatgtctctcgacagGTTAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAATCCCTAATACAAACGAGTCCCACTCGGTTCAAATTATTTTGCCTTAGA

Basic information

species Zea mays
transcript GRMZM2G318942_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G318942_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 3'ss of exon 9
gtgaatactct---ctatatccagattttagagggcttggttattttggtgccaaatacttatattttgcttgatgacaagctaatttactg--atttttccatcctgaaaaagtatttgttattatatgaccttctggtgtttttggtaaactttttttctcatt-------tttttgccacccta---atgtctctcgacagGTTAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAATCCCTAATACAAACGAGTCCCACTCGGTTCAAATTATTTTGCCTTAGA
|| |||  |||   || ||| ||  || |  |   | ||  | || |       | ||  |  |||| |   |||  | || | || ||||   || ||  ||   | | |    ||||  |||| | |   ||||   |   |||| | |    ||||  | | |         ||||     ||    |  | | |  ||||||||||||||| || | |||||  || ||||||||||| ||||||||||||||  | |  ||||| || || ||||| || || |||||||||||  |||
gttaattttctttcctgtattcaatttatttaccacatgaattttct----ttcagtatgttcatttag---gattcctagatgatgtacttccatcttaacacattcacagcaaatttactattttttcttcttcccttccatttgttgagaagttttattaactacaaccacatttgatgttctgtatacatttattaacagGTTAGGAAGATAGGGAAAGTTGCACGAGCAATTGCTATAATGAGCCACCCAATTGCAAGCACAAATGACTCTCACTCAGTCCAGATTATTTTGCCACAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttggtaaactttttttctcatttttttgccaccctaatgtctctcgacagGTTAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAATCCCTAATACAAACGAGTCCCACTCGGTTCAAATTATTTTGCCTTAGA
                                    ccctaat  putative branch site (score: 3)
                                          tgtctctc  CT-rich tract
         taaactttttttctca  TA-rich tract