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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtctggaccatgcatgaaccgtcttttcttctctcacgatctcatcgtcctcccccgaagagtttgtagtctcacatttgttcattgcgttggtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGATAGGTACAGCTCCAAGCTAGGTGGAGGAAGGGAGCCTCAGCAAGCGCGAG

Basic information

species Zea mays
transcript GRMZM2G317938_T01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28986497|gb|CB351167.1|CB351167
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|110525123|gb|EE029307.1|EE029307
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|50327269|gb|CO522395.1|CO522395
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18168013|gb|BM337853.1|BM337853
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|17930860|gb|BM267820.1|BM267820
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|71449920|gb|DR830970.1|DR830970
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|148948180|gb|EC893695.2|EC893695
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|148974556|gb|EE025344.2|EE025344
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|17930959|gb|BM267919.1|BM267919
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18164788|gb|BM334627.1|BM334627
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|17930128|gb|BM267088.1|BM267088
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|89757580|gb|DY687122.1|DY687122
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|71774236|gb|DR972114.1|DR972114
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18162265|gb|BM332104.1|BM332104
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAACAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18176160|gb|BM351214.1|BM351214
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18174123|gb|BM349511.1|BM349511
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|101382927|gb|EB813517.1|EB813517
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|71761679|gb|DR959616.1|DR959616
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18175008|gb|BM350396.1|BM350396
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGAACAAGAACCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|78091402|gb|DV519776.1|DV519776
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18171117|gb|BM340957.1|BM340957
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18165284|gb|BM335123.1|BM335123
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|88747895|gb|DY532036.1|DY532036
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|50332716|gb|CO527842.1|CO527842
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18168209|gb|BM338055.1|BM338055
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18166054|gb|BM335893.1|BM335893
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|148961318|gb|EE012046.2|EE012046
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTTGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|110208205|gb|EC890102.1|EC890102
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|16921921|gb|BM075352.1|BM075352
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18170385|gb|BM340225.1|BM340225
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18163903|gb|BM333742.1|BM333742
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGAGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18165965|gb|BM335804.1|BM335804
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|76917499|gb|DV166864.1|DV166864
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18172936|gb|BM348324.1|BM348324
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|110195160|gb|EC877057.1|EC877057
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|76913502|gb|DV165156.1|DV165156
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
EST: gi|18164086|gb|BM333925.1|BM333925
EST:     TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGAC                         GATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT
genomic: TGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 46

CCTGGTGGCGCTCCGCTGCGTGGACCCTGACGCGAACAAGCGGCCTAAGATGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGATAGGTACAGCTCCAAGCTAGGTGGAGGAAGGGAGCCTCAGCAAGCGCGAG


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 21

CCTGGTGGCGCTCCGCTGCGTGGACCCTGACGCGAACAAGCGGCCTAAGATGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGATAGGTACAGCTCCAAGCTAGGTGGAGGAAGGGAGCCTCAGCAAGCGCGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 35

CCTGGTGGCGCTCCGCTGCGTGGACCCTGACGCGAACAAGCGGCCTAAGATGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGATAGGTACAGCTCCAAGCTAGGTGGAGGAAGGGAGCCTCAGCAAGCGCGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 36

CCTGGTGGCGCTCCGCTGCGTGGACCCTGACGCGAACAAGCGGCCTAAGATGGGGCATGTGATCCACATGCTCGAAATGGACGATCTCCAGTTCCGAGACgtatgtgtct ... gtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGATAGGTACAGCTCCAAGCTAGGTGGAGGAAGGGAGCCTCAGCAAGCGCGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcccccgaagagtttgtagtctcacatttgttcattgcgttggtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGATAGGTACAGCTCCAAGCTAGGTGGAGGAAGGGAGCCTCAGCAAGCGCGAG
                     gtctcac  putative branch site (score: 36)
                            atttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtgtctggaccatgcatgaaccgtcttttcttctctcacgatctcatcgtcctcccccgaagagtttgtagtctcacatttgttcattgcgttggtatgaacagGATAAGAGGCCCGGGGCCGGGAGAGATGGTCGTCGTCCCCAGGGTCCGGATAGGTACAGCTCCAAGCTAGGTGGAGGAAGGGAGCCTCAGCAAGCGCGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG