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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaccatatagcttatttctttccacatgctttagtttcttgccttcactactttgtcttgaccaaaaacatccgtgtgcagTTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA

Basic information

species Zea mays
transcript GRMZM2G315230_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315230_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g53810.1 (Oryza sativa), 3'ss of exon 9
gttagtaccatatagcttatttctttccacatgctttagtttcttgc-cttcactactttgtcttgaccaaaaacatccgtgtgcagTTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA
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gttagtatcgtat-gcctgattggttctgcatggttagaatttttacacctgacaaaaatgt--tgacatggaacgtctttgtgcagTTGATGGCAAACAAATTGGTGCTGTCCAGAGCAAAGATCTTTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78023340|gb|DV491727.1|DV491727
EST:     TACAAAGATAGACTTCCGGCAAACATCCGATGGTCAGCTAATAACTGAAA                         TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA
genomic: TACAAAGATAGACTTCCGGCAAACATCCGATGGTCAGCTAATAACTGAAAgttagtacca ... ccgtgtgcagTTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA
EST: gi|4688464|gb|AI637134.1|AI637134
EST:     TACAAAGATAGACTTCCGGCAAACATCCGATGGTCAGCTAATAACTGAAA                         TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA
genomic: TACAAAGATAGACTTCCGGCAAACATCCGATGGTCAGCTAATAACTGAAAgttagtacca ... ccgtgtgcagTTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA
EST: gi|4730337|gb|AI649503.1|AI649503
EST:     TACAAAGATAGACTTCCGGCAAACATCCGATGGTCAGCTAATAACTGAAA                         TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA
genomic: TACAAAGATAGACTTCCGGCAAACATCCGATGGTCAGCTAATAACTGAAAgttagtacca ... ccgtgtgcagTTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttagtttcttgccttcactactttgtcttgaccaaaaacatccgtgtgcagTTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA
                             tcttgac  putative branch site (score: 3)
                                     aaaaacat  TA-rich tract