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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattactttatccatcctatcacaatacttcaggttgcatatgtctcatgattgctgtgacctgctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTACTGAAATGAACAACCAGCAATATGTATGACATATATGTGTGTTAAAGGT

Basic information

species Zea mays
transcript GRMZM2G314679_T05
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G314679_T08 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g21250.1 (Oryza sativa), 3'ss of exon 6
gtaattactttatccatcctatcacaat---acttcaggttgcatatgtctcat-gattgctgtgacctgctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTACTGAAATGAACAACCAGCAATATG----TATGACATATATGTGTGTTAAAGGT
||| || |||||||  ||  |  | | |     |||  ||| ||||  ||||||  |||    || |||  ||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||||| || || | ||  |       | ||      | | |  | | || ||| |    
gtattt-ctttatcattcggagaaaatttgcttttctagttccata-atctcattaattttcatggcctattctctgcagACGATATCTCAGGCTTTAGCCACTGCTAGGGAGCACCTTGCAAGATCTCTGCTCAAGTAAATCATTTATCTTTTGACTCCTTAAAACTTCTCTGCGTTGA----

upper sequence: GRMZM2G314679_T08 (Zea mays), 3'ss of exon 3
lower sequence: PP1S13_191V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------gtaattactttatccatcctatcacaatacttcaggttgcatatgtctcatgattgctgtgacct-gctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTACTGAAATGAACAACCAGCAATATGTATGACATATATGTGTGTTAAAGGT-
                        |||| |  ||      |        | |  |       | | | |    ||  |  | |  | | | | ||||||||| || ||||||||||| || ||||| | ||||||| |||||||||| || || || |     |     | |   | || |  ||       || |||   
tggtcgtacttccaagcgagtacataatcagattgattccctgtctgtgaaatgttcttcaccttctattgtgtgccttttttttcttcgttttgtgcagACAATTTCTCAGGCACTCGCAACAGCGAAGGAGCACTTTGCAAGATCGCTGCTTAAGTAGGACATTGAAACTCGATCTG-CTCATGGTGAAATTGAAGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211411155|gb|FK961654.1|FK961654
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|60356728|gb|DN223701.1|DN223701
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTTTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|32849532|gb|CD989213.1|CD989213
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATACCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|15323565|gb|BI478787.1|BI478787
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|4681229|gb|AI629899.1|AI629899
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|32908218|gb|CF013031.1|CF013031
EST:     TAAGGTTGCAACCAATGCTGTTGATGGTTCTGGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: TAAGGTTGCAACCAATGCTGTTGATGGTTCTG-TGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|87157301|gb|DY402090.1|DY402090
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGNCA-GATCTTT
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTG-CAAGATCTCT
EST: gi|32938645|gb|CF043464.1|CF043464
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|22819508|gb|BU499598.1|BU499598
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTTTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|56382683|gb|CV985352.1|CV985352
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|62550301|gb|DN830721.1|DN830721
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|5928724|gb|AW055941.1|AW055941
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTTTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|5901227|gb|AW042327.1|AW042327
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|16925380|gb|BM078448.1|BM078448
EST:     GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: gi|6227104|gb|AW155808.1|AW155808
EST:     NTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG                         ACGATATCTCAGGCAC
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacaatacttcaggttgcatatgtctcatgattgctgtgacctgctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTACTGAAATGAACAACCAGCAATATGTATGACATATATGTGTGTTAAAGGT
                                         cctgctct  CT-rich tract