1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acattcatttacagtttcaatcttttcctctttccacttcataatggaagcatgctggcacataaatacctcagtaatttacctgtgttttctgttccagCGTTATCGATATTTGGAGGCATACGGGGTTGATCGTAGTCTTCAGAAATTTGAGCAAAAGGAATTGGAAAATGCCACTGAAGAGATTGCTTCAAAAATTA
species | Zea mays |
transcript | GRMZM2G312738_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCCCATGGATCCAATTGGTAGTCTGCTTGTTGTCTACTACCTTCGG CGTTATCGATATTTGGAGGCATACGAGGTTGATCGTAGTCTTCAGAAATTTEST: gi|46206406|gb|CN181469.1|CN181469
genomic: AAGCGCCCATGGATCCAATTGGTAGTCTGCTTGTTGTCTACTACCTTCGGgtaaatattg ... tctgttccagCGTTATCGATATTTGGAGGCATACGGGGTTGATCGTAGTCTTCAGAAATTT
EST: AAGCGCCCATGGATCCAATTGGTAGTCTGCTTGTTGTCTACTACCTTCGG CGTTATCGATATTTGGAGGCATACGNNNTTGATCGTAGTCTTCA
genomic: AAGCGCCCATGGATCCAATTGGTAGTCTGCTTGTTGTCTACTACCTTCGGgtaaatattg ... tctgttccagCGTTATCGATATTTGGAGGCATACGGGGTTGATCGTAGTCTTCA
ggaagcatgctggcacataaatacctcagtaatttacctgtgttttctgttccagCGTTATCGATATTTGGAGGCATACGGGGTTGATCGTAGTCTTCAGAAATTTGAGCAAAAGGAATTGGAAAATGCCACTGAAGAGATTGCTTCAAAAATTA
ttttctgttcc CT-rich tract
acataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattcatttacagtttcaatcttttcctctttccacttcataatggaagcatgctggcacataaatacctcagtaatttacctgtgttttctgttccagCGTTATCGATATTTGGAGGCATACGGGGTTGATCGTAGTCTTCAGAAATTTGAGCAAAAGGAATTGGAAAATGCCACTGAAGAGATTGCTTCAAAAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA