1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggagttggactactggtgttaatagggccatagttttcacatgcaagatttccatgctagtgtgagctttatttaaacccttaccctggcaattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAACTGAACAGATACATCCCAACTGCTGCAGCATTTGGAGGAGTGTGCATTG
species | Zea mays |
transcript | GRMZM2G307252_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|40302792|gb|CK347179.1|CK347179
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|32846329|gb|CD986010.1|CD986010
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|211438473|gb|FL466383.1|FL466383
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|5525766|gb|AI861659.1|AI861659
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|211435890|gb|FL466382.1|FL466382
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|71426282|gb|DR807332.1|DR807332
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: TTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|37388526|gb|CF631472.1|CF631472
genomic: TTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATTGTGAGTCAAACCTGCAAAGGGAAEST: gi|78024965|gb|DV493352.1|DV493352
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|6695437|gb|AW288545.1|AW288545
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|211223105|gb|FL468693.1|FL468693
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCCGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|211221054|gb|FL468692.1|FL468692
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAASCAGCTGAAG GAGCAACAAATGGTGATGCCCGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|45567388|gb|CK985547.1|CK985547
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|67024545|gb|CO453294.1|CO453294
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GCGAAGGACTGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|71305340|gb|DR788803.1|DR788803
genomic: GCGAAGGAC-GTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|78025522|gb|DV493909.1|DV493909
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAAEST: gi|5915599|gb|AW053240.1|AW053240
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
genomic: GGATTGAAGTTTCTGGTTCATCAGCGAAGGACGTTGCTAAGCAGCTGAAGgtaaaaccat ... aattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAA
agatttccatgctagtgtgagctttatttaaacccttaccctggcaattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAACTGAACAGATACATCCCAACTGCTGCAGCATTTGGAGGAGTGTGCATTG
cccttac putative branch site (score: 3)
tttatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagttggactactggtgttaatagggccatagttttcacatgcaagatttccatgctagtgtgagctttatttaaacccttaccctggcaattcaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACCTGCAAAGGGAACTGAACAGATACATCCCAACTGCTGCAGCATTTGGAGGAGTGTGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG