1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcaatgatgcacatggtttttttttctgaattattgctgtttgattttgcggaacagccatagttgaattgaaatattgcgtgcgtggacagATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCGCTGGAGCTTCTCAGGACCAGCATGGATGTGGAAGACAGTCTGTCAGAG
species | Zea mays |
transcript | GRMZM2G306851_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGACGTCATCGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAG ATCAGGAAGAACACGCTCATCTACCAGGEST: gi|71762597|gb|DR960534.1|DR960534
genomic: CCAAGGACGTCATCGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAGgtcaatgatg ... gcgtggacagATCAGGAAGAACACGCTCATCTACCAGG
EST: CCAAGGACGTCATCGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAG ATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCGEST: gi|71448290|gb|DR829340.1|DR829340
genomic: CCAAGGACGTCATCGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAGgtcaatgatg ... gcgtggacagATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCG
EST: CCAAGGACGTCATCGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAG ATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCGEST: gi|149083205|gb|EE172480.2|EE172480
genomic: CCAAGGACGTCATCGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAGgtcaatgatg ... gcgtggacagATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCG
EST: CCAAGGACGTCATTGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAG ATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCG
genomic: CCAAGGACGTCATCGACTCCGCATTCAAGGACCCCGTCAAGCGCGAGAAGgtcaatgatg ... gcgtggacagATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCG
tgtttgattttgcggaacagccatagttgaattgaaatattgcgtgcgtggacagATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCGCTGGAGCTTCTCAGGACCAGCATGGATGTGGAAGACAGTCTGTCAGAG
gtttgat putative branch site (score: 5)
ttgaattgaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaatgatgcacatggtttttttttctgaattattgctgtttgattttgcggaacagccatagttgaattgaaatattgcgtgcgtggacagATCAGGAAGAACACGCTCATCTACCAGGACAAGCCCCGGCTGAAGACGGCGCTGGAGCTTCTCAGGACCAGCATGGATGTGGAAGACAGTCTGTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA