1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaactaagtatttctgctcttggcaccatttaccatgcaattctcactacatgattgcagtttttttttttttttgcatctgggacatatattgcaatggtaatagtgatatacatggttggtgtactttaactatggatgattctgttaaagttattgctctgtgttctgacagAACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTACTGGAGTACCTTAAAGGAAAGCGAGACGATCAGCAGTTCCCCAGGATGT
species | Zea mays |
transcript | GRMZM2G306374_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAAAATATTGATATTGGTGGGCCCACGATGATCAGAGCTGCAGCCAAG AACCATAAGGATGTTCTTATTGTGGTGGAKCATAATGATTATCCTGCTTTAEST: gi|211434559|gb|FL190551.1|FL190551
genomic: TTGAAAATATTGATATTGGTGGGCCCACGATGATCAGAGCTGCAGCCAAGgtaactaagt ... gttctgacagAACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTA
EST: TTGAAAATATTGATATTGGTGGGCCCACGATGATCAGAGCTGCAGCCAAG AACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTAEST: gi|211431971|gb|FL190549.1|FL190549
genomic: TTGAAAATATTGATATTGGTGGGCCCACGATGATCAGAGCTGCAGCCAAGgtaactaagt ... gttctgacagAACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTA
EST: TTGAAAATATTGATATTGGTGGGCCCACGATGATCAGAGCTGCAGCCAAG AACCATAAGGATGTTCTTATTGTGGNGGATCATAATGATTATCCTGCTTTAEST: gi|67028824|gb|CO457573.1|CO457573
genomic: TTGAAAATATTGATATTGGTGGGCCCACGATGATCAGAGCTGCAGCCAAGgtaactaagt ... gttctgacagAACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTA
EST: CACGATGATCATAGCTGCAGCCAAG AACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTA
genomic: CACGATGATCAGAGCTGCAGCCAAGgtaactaagt ... gttctgacagAACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTA
ggtgtactttaactatggatgattctgttaaagttattgctctgtgttctgacagAACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTACTGGAGTACCTTAAAGGAAAGCGAGACGATCAGCAGTTCCCCAGGATGT
ctttaac putative branch site (score: 257)
ttaaagttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaagtatttctgctcttggcaccatttaccatgcaattctcactacatgattgcagtttttttttttttttgcatctgggacatatattgcaatggtaatagtgatatacatggttggtgtactttaactatggatgattctgttaaagttattgctctgtgttctgacagAACCATAAGGATGTTCTTATTGTGGTGGATCATAATGATTATCCTGCTTTACTGGAGTACCTTAAAGGAAAGCGAGACGATCAGCAGTTCCCCAGGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG