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gtgctctccctctcccccctctctctctctctccctccctcaatggttattggttggttaattttgttgtgtgccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAGAGTTCTATGGAAGG
species | Zea mays |
transcript | GRMZM2G305254_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAEST: gi|149107780|gb|EE292141.2|EE292141
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAEST: gi|148936664|gb|EC880790.2|EC880790
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG GTACGTGAAGCTGATATATCTAGGCTTTCATEST: gi|19057930|gb|BM736597.1|BM736597
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCAT
EST: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGCCG GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAEST: gi|18963438|gb|BM660435.1|BM660435
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAEST: gi|18963930|gb|BM660710.1|BM660710
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
tctctccctccctcaatggttattggttggttaattttgttgtgtgccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAGAGTTCTATGGAAGG
ggttaat putative branch site (score: 4)
ttaattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctctccctctcccccctctctctctctctccctccctcaatggttattggttggttaattttgttgtgtgccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAAGAGTTCTATGGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG