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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcaaatctaatcatgaccgctatgaagtcttcgttttctgcatgttttttttgtggatggattcatacattatccactttgaactaacatgtagGTACTGCACCACTTACTGCCGTCCAGTTGCTATGGGTGAACATGATCATGGATACATTAGGAGCCTTGGCCTTAGCGACAGAGCCGCCTAACGATGAAAT

Basic information

species Zea mays
transcript GRMZM2G305159_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 3'ss of exon 5
gtgtgcaaatctaatcatgaccgctatgaagtcttcgttttctgcatgttttttttgtggatggattcatacattatccact----ttgaactaacatgtagGTACTGCACCACTTACTGCCGTCCAGTTGCTATGGGTGAACATGATCATGGATACATTAGGAGCCTTGGCCTTAGCGACAGAGCCGCCTAACGATGAAAT
 |    | ||||| | || |   ||||    | ||| | |  |   || ||   |   |   |  |  |   ||| ||| ||    ||    | || || ||| | ||||||||||||||| || ||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| || || || || |||||
-tagatatatctactgattattcctattcc-tattcctatggtatttgattccataacgccggtctataataattgtcctctcttcttccctttacttgaagGGAGTGCACCACTTACTGCTGTTCAGTTGCTATGGGTGAACATGATTATGGATACGTTGGGAGCCTTGGCCTTAGCCACAGAACCACCAAATGACGAAAT

upper sequence: GRMZM2G305159_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv13s0158g00360.t01 (Vitis vinifera), 3'ss of exon 5
gtgtgcaaatctaatca-tgaccgctatgaagtcttcgttttctgcatgttttttttgtggatggattcatacattatccactttgaactaacatgtagGTACTGCACCACTTACTGCCGTCCAGTTGCTATGGGTGAACATGATCATGGATACATTAGGAGCCTTGGCCTTAGCGACAGAGCCGCCTAACGATGAAAT
||| |   ||| | | | |        | |   |||    ||  || | | | |  |   ||||  ||   |    ||    ||  || |||  |  |||  |||| || |||||||| ||||||||||| |||||||| ||||||||||| ||  | || || || ||||| || |||||| | || |  ||||   |
gtgcgttcatccattaaatctttttccttacaacttaagatttggcgtctatataataaagatgacttagaa----atttctttccaagtaattttcagGATCTGCTCCTCTTACTGCTGTCCAGTTGCTCTGGGTGAATATGATCATGGACACTCTTGGTGCATTAGCCTTGGCTACAGAGGCTCCAACTGATGGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgttttttttgtggatggattcatacattatccactttgaactaacatgtagGTACTGCACCACTTACTGCCGTCCAGTTGCTATGGGTGAACATGATCATGGATACATTAGGAGCCTTGGCCTTAGCGACAGAGCCGCCTAACGATGAAAT
                                          aactaac  putative branch site (score: 1)
     ttttttttgt  TA-rich tract