Sequence
atgc intronic sequence ATGC exonic sequencegttatattctgctcttccctccctaaatttgaatctcatgttcaggcatcagctgatagtaaggatgcatgtttgttcatccagTATGATCCACCTCAAGATCCCAACGTTTTCATACATAGAGCTGGCCGTACAGCACGCTATGATCAAGAAGGGGATGCTATTGTTTTTCTCTTACCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G303752_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g07080.2 (Oryza sativa), 3'ss of exon 6
gttatattctgctcttccctccctaaatttgaatctcatgttcaggcatcagctgatagtaaggatgcatgtttgttcatccagTATGATCCACCTCAAGATCCCAACGTTTTCATACATAGAGCTGGCCGTACAGCACGCTATGATCAAGAAGGGGATGCTATTGTTTTTCTCTTACCAAAG
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gtaatgctttgaacataactccctaaattgtttccttgtgctt-gtcattagttgatataaaacatt--tgtttcttc-cccagTATGATCCACCTCAAGATCCCAATGTGTTCATACATAGAGCTGGCCGTACTGCACGTTATGATCAAGAAGGAGATGCTATTGTATTCCTCTTACCGAAG
upper sequence: GRMZM2G303752_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA18G02760.1 (Glycine max), 3'ss of exon 6
----------------gttatattctgctcttccctccctaaatttgaatctcatgttcaggcatcagctgat--agtaaggatgca-tgtttgttcatccagTATGATCCACCTCAAGATCCCAACGTTTTCATACATAGAGCTGGCCGTACAGCACGCTATGATCAAGAAGGGGATGCTATTGTTTTTCTCTTACCAAAG
|| ||| | ||| || || |||| | | | || | | || || | ||||| | | ||||||||||| ||||||||||| || |||||||||||||||| || || || || || | | || |||| ||||| |||| || | |||||||||
gtattgtctattgactattgcatttcaattttcatcttctttggttctgtctctctcttggttgctaaaccatgcattgtggttgaaatgttttcttgtgcagTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAG
upper sequence: GRMZM2G303752_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA11G35640.1 (Glycine max), 3'ss of exon 6
---------------------------------------------------------gttatattctgctcttccctccctaaatttgaatctcatgttcaggcatcagctgatagtaaggatgcatgtttgttcatccagTATGATCCACCTCAAGATCCCAACGTTTTCATACATAGAGCTGGCCGTACAGCACGCTATGATCAAGAAGGGGATGCTATTGTTTTTCTCTTACCAAAG
| | || | ||| | | ||| | | | ||| || | || | ||| | ||| | | ||||||||||| ||||||||||| ||||||||||||||||||| || || || || || | | || |||| ||||| |||| || | |||||||||
gtagctctgtgcttctgtgaccttgtatatgatactgtctattgactattgcatttcatcttctttggttctctctctctctcccttggctgctaaaatagaccatacagtg-tggttaaaatg--ttttttcttgtgcagTATGATCCTCCTCAAGATCCAAACGTTTTCATACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaatctcatgttcaggcatcagctgatagtaaggatgcatgtttgttcatccagTATGATCCACCTCAAGATCCCAACGTTTTCATACATAGAGCTGGCCGTACAGCACGCTATGATCAAGAAGGGGATGCTATTGTTTTTCTCTTACCAAAG
agctgat putative branch site (score: 4)
tttgttc putative PPT
atagtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatattctgctcttccctccctaaatttgaatctcatgttcaggcatcagctgatagtaaggatgcatgtttgttcatccagTATGATCCACCTCAAGATCCCAACGTTTTCATACATAGAGCTGGCCGTACAGCACGCTATGATCAAGAAGGGGATGCTATTGTTTTTCTCTTACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG