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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtagataggtacaatatattcattgatgtgtatgtgcgaatattttttctattttttcacatcaatgtcatccaaacattcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC

Basic information

species Zea mays
transcript GRMZM2G303631_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303631_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 3'ss of exon 6
gtatgtgtagataggtacaatatattca--ttgatgtgtatgtgcgaatattttttctattttttcacatcaatgtcatccaaacattcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC
||||||| ||||| ||| |   | ||||  ||||  |   |||   |  |||| || | || | |||| |   |||  |   ||| |||     |||||||| |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||||||||||||||
gtatgtgcagataagtagatggttttcactttgactttgctgtcttagcatttctt-tgttatctcactttgttgttgtt--aaccttc-----cagGACACTTTCCGTGGTAGAGTGTGTGAATGCCCTACATTCAATGGTGTGCAGTTTAAAGGCGATGGCTACAGCAATTGTGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5325106|gb|AI783297.1|AI783297
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: gi|211449604|gb|FL033165.1|FL033165
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: gi|211156293|gb|FL375842.1|FL375842
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTSTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTT
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTT
EST: gi|32850609|gb|CD990290.1|CD990290
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTA
EST: gi|91054221|gb|EB164639.1|EB164639
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: gi|211449603|gb|FL033164.1|FL033164
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: gi|101394205|gb|EB819037.1|EB819037
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: gi|211449602|gb|FL033163.1|FL033163
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: gi|211229612|gb|FL380029.1|FL380029
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: gi|211212797|gb|FL419176.1|FL419176
EST:     ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTWACAGCCTGTAGG                         GACACCTTCCGTGGTAGAGTGTGTGAATTGCCCCACTTT
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAAT-GCCCCACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgaatattttttctattttttcacatcaatgtcatccaaacattcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC
                                            ttcttac  putative branch site (score: 2)
                                            ttcttactc  CT-rich tract
     atattttttctatttt  TA-rich tract