1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggtgggacatagtagttaagtagcattttcataaacaaacatgatatctgactctttattaatgtgtttcttgttctcataccatggaaatgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCCCAGTCTCCGATGCATACAAGAAGCCTAGCGGTCCTCAAGAGGCAG
species | Zea mays |
transcript | GRMZM2G302559_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTGAGCTTGACA ACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCCEST: gi|22545328|gb|BU097687.1|BU097687
genomic: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTAAGCTTGACAgtatgtcata ... tgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCC
EST: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTGAGCTTGACA ACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCCEST: gi|26455321|gb|CA826904.1|CA826904
genomic: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTAAGCTTGACAgtatgtcata ... tgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCC
EST: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTGAGCTTGACA ACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCCEST: gi|87154479|gb|DY399268.1|DY399268
genomic: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTAAGCTTGACAgtatgtcata ... tgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCC
EST: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTGAGCTTGACA ACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCCEST: gi|26454967|gb|CA826550.1|CA826550
genomic: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTAAGCTTGACAgtatgtcata ... tgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCC
EST: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTGAGCTTGACA ACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCC
genomic: TGAAGAACCCATCAGCCTACCATTATGACATTTTGGTCCTAAGCTTGACAgtatgtcata ... tgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCC
atctgactctttattaatgtgtttcttgttctcataccatggaaatgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCCCAGTCTCCGATGCATACAAGAAGCCTAGCGGTCCTCAAGAGGCAG
tattaat putative branch site (score: 2)
tttattaatgtgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgggacatagtagttaagtagcattttcataaacaaacatgatatctgactctttattaatgtgtttcttgttctcataccatggaaatgtggtgtagACCTTGATCTGTGGTCTTCTTGGCATTCCTCCATCTAATGGAGTACTCCCCCAGTCTCCGATGCATACAAGAAGCCTAGCGGTCCTCAAGAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - agtagca
- - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggaa