1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataaagttttcaatgttaatacttaatagatgccactacagtcaacacacgtttgatcccatagagatgcccttagtacagatgatgtccacctatgacctatctgatgacatttgacatctttttatttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGATCTGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG
species | Zea mays |
transcript | GRMZM2G302245_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGAEST: gi|7217062|gb|AW563184.1|AW563184
genomic: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGA
EST: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTGGTCCAAAATTGGTAGATGCTACCAGCCTANAGAATAAGAATGCCAGAEST: gi|89760148|gb|DY688686.1|DY688686
genomic: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGA
EST: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGAEST: gi|5108328|gb|AI740041.1|AI740041
genomic: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGA
EST: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGAEST: gi|89760150|gb|DY688687.1|DY688687
genomic: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGA
EST: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGAEST: gi|87157395|gb|DY402184.1|DY402184
genomic: TTGGAGGAAACCAGTTTGGGCAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGA
EST: TTCTGATCAGGCTGAG ACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGA
genomic: TTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGA
gatgtccacctatgacctatctgatgacatttgacatctttttatttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGATCTGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG
atttgac putative branch site (score: 46)
catctttttatttc CT-rich tract
atctttttatttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaagttttcaatgttaatacttaatagatgccactacagtcaacacacgtttgatcccatagagatgcccttagtacagatgatgtccacctatgacctatctgatgacatttgacatctttttatttcaatgcagACTGTTCCAAAATTGGTAGATGCTACCAGCCTAGAGAATAAGAATGCCAGATCTGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT