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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccactggcgatgttctacatttttttttccagtttgtcaattataatactgtagcatgtaatttggtcattcttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAATTTGATCAATGTGCATATCTTTTTGAAGACCATATATGCTGCAAGGTGG

Basic information

species Zea mays
transcript GRMZM2G302195_T03
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32922315|gb|CF027127.1|CF027127
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAA
EST: gi|32790955|gb|CD943191.1|CD943191
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
EST: gi|32920326|gb|CF025138.1|CF025138
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATT
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATT
EST: gi|32803989|gb|CD956225.1|CD956225
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
EST: gi|211474396|gb|FL070285.1|FL070285
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCMAATGGTCATATCATTAAGAATGTCACAA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagtttgtcaattataatactgtagcatgtaatttggtcattcttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAATTTGATCAATGTGCATATCTTTTTGAAGACCATATATGCTGCAAGGTGG
                                          ttcttattt  CT-rich tract
     tttgtcaattataata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccactggcgatgttctacatttttttttccagtttgtcaattataatactgtagcatgtaatttggtcattcttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAATTTGATCAATGTGCATATCTTTTTGAAGACCATATATGCTGCAAGGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC