Sequence
atgc intronic sequence ATGC exonic sequencegtatttcatcgacaaacaatttcttcatccatgaggcaacttgtttactgcaactgccatcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G300862_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 3'ss of exon 5
----------------gtatt--tcatcga-caaacaatttcttcatc---catgaggcaacttgtttactg------caactgccatcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAG
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gtattctcaccagagggtattcattatgaagcaaactattagttcattgtaattgttattaccttttcttttagaagtcaatcgtcatcacttgcagGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89759013|gb|DY687973.1|DY687973EST: ACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAG GGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTG
genomic: ACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAGgtatttcatc ... tcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaatttcttcatccatgaggcaacttgtttactgcaactgccatcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGTGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAG
ttgttta TA-rich tract