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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA

Basic information

species Zea mays
transcript GRMZM2G181151_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 6
gtaagtaatttct-ggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgat-tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
||||||  || ||   |||| |  | ||||| |  ||   |||| || ||||||||||| |              ||||  ||||  |||      | |||  ||||   ||   ||  |  | | | | | |||| ||||  || ||| ||| || |||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||
gtaagtttttgctcaattcaggtgcactgctatggaa-attcatagttaagtgcatgttct--------------tttatcagtacggat-----ggtggc--taaacttatatttctcttctgataatat-taataatgtcttccgatgtttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAACAGGGATATCAACCATTGATGTCATGAACTCCATTGCTCGAGGCCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA-
                                                                               |  || |   |  |  |  |   | |||      ||   |||||    ||| |||  || | | |||    |  | |||||||||| || || || ||||||||||||||||||||||||||||| || || || ||||| ||||||||||| ||||| || |||||| | || ||||| 
------------------------------------------------------------------------------tatataatttcttctggggaggtctgaatatgcatgtttttctttgcc-tttttaaatattttccctg----taattcaggAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                 ||| |    ||     | | || |  |  |  |    ||  |  ||| ||  || ||||     |      || |  ||  | | |||  |||||||||| || ||||| |||||| ||||||| || ||||||||||| || ||||| ||||| || |||||||| ||||| || |||||| | || |||||
-----------------------------------------------------------------gtatttaacttcctttgcagtgttctacaattg----tatgttgatgtgtgaatttttacccccta-----atatcttcccaatatgt--cagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGACTGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                            || ||  |||  ||     | || ||  |||   |  ||  ||||||    ||| |||| || | | |      |  | |||||||||| || || || ||||||||||||||||| ||||||||||| || || |||||||| ||||||||||| ||||| || |||||| | || |||||
---------------------------------------------------------------------------gtataaa-atttcttctggggaggtat-gaatatgtatgtttatctttgccttttttaat-atatccccca----taattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 7
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatga--gtccatctttaaagtttgtaatcatg-tactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                                  | |  |||  || || |  ||  |  | ||   ||  || | | |  ||| |   | |  ||   |     | || |||||||||| || ||||| ||||||||||||||||| ||||||||||| || || || ||||| || |||||||| ||||| || |||||| | || |||||
-------------------------------------------------------------------------------gtatttaaattcctttgcagtgttctacaattgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                 ||     | |||||   | |||    || |     ||   || |   |   ||     | |   | ||||  |  ||| |  |||   | ||||||||||||| ||||||||||||||||||||||| || |||||||| || || || ||||||||||||||||| |||||||| || ||  | || || ||
-----------------------------------------------------------------gtgagctgctttagcc-tcttgtcacataattactatctcataataaaacacac----aga---tataattctagacttttgtttc--tccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgatt-ttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                    ||  |  ||    |  |  | | | | |     | ||   || ||    ||||     ||||  |||  | |     |||  || ||  ||||||||| || || |||||||| |||||||| || || |||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||
--------------------------------------------------------------------gtgagcattgactgcctcaagtcaattgtactctgaagagaaggaaaaaatct-----gttttaaattgtttcggtcgataatttttatagGAAGTTCAATCAACCCCAGTGAAAGAACCTACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCCATTGCTCGTGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttg-cagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                   || |  |   || |  |||  |  |||     |  | || |||||  | ||| |     |||  |||  ||||    |  || | |||  ||||||||| || || |||||||| ||||||||||| || |||||||| || || || ||||| ||||| ||||| ||||| |||||||||||||| || ||
----------------------------------------------------------------gtgagcaactaagaggacaattattccattgagatctctgaagcaatgt-ttcattt-----gttcttaaaaatgtcaattccttatattgatagGAAGTTCAATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGATACAGACAGGCATATCGACCATCGATGTCATGAATTCCATTGCTCGTGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggca-ttaaatcaatgagtccatctt--taaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                             |  |||| |  | |    |  || ||||| |||| |   |  ||    || || |  || ||       | | |||| |  |  ||    | | |   |||||||||||| || |||||||||||||||||||| || |||||||| ||||| ||||| || || |||||||| ||||||||||||||||| || |||||
-------------------------------------------------------------gtcagtaat--gctaggaagataatgatttattaccaaaagctagggaaaagattttatgttatctggatatataataaactcttccttgtctttcatagGAAGTTCTATCAACCCCAGTGAGAGAACCTATCCTGAAGAGATGATACAAACAGGGATTTCTACTATTGATGTCATGAACTCCATTGCTCGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                 |||  | || | |   || |||   ||||    |    | | |    | | | |  |    | |   ||     | |   |||| || | | || |  |||| |  |||| ||||| || ||||| ||||||||||| ||||| || ||||||||||| || ||||| || || |||||||| ||||| || |||||  | || || ||
-------------------------------------------------gtgagttttttaggaggtggtattatttaaccattaaaactcacct-ctgaactttagagtttacaacagtggcagatcctgtactctttttctttcctttttt--cagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                               | |  ||| |  | |   || ||  || |     |||   || |  | || | | || |  || | |  ||  |||   |   |   || |||||      | ||   |||| |||| | | | ||||   ||| || || || |||||| | || || || ||||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || |||||
------------------------------gtgct-tgcactcgctttggtacaccttataatcggtaactggctgcaaaattttggaatattttgtgctat-gaattgctatat---tcgttaaa-----cagtc---tact-tgatgtggcttcagGTGCTTCAATCAACCCTAGTGAGCGGACATACCCTGAGGAGATGATTCAAACTGGAATATCTACCATTGATGTCATGAACTCTATTGCTCGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                    | ||    |  |||| | | ||   |    | |   ||      ||  | ||| | | | |   ||             |   ||||     ||       | ||  | | ||||  | || || ||| |  |  ||||    || || ||||| |||||| | || || |||||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| ||||||||
--------------------gtacttccccttacactacccacattc---tactcatt------agccgcaggctcttggaacctt-------------cggaaaattttgaag-------taaatatgtttaatattatattc-gatctgatcacagGTGCATCGATCAATCCTAGTGAGCGGACGTACCCAGAGGAGATGATTCAAACAGGAATATCTACGATTGATGTCATGAACTCTATTGCTCGAGGGCAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102148|gb|CF062108.1|CF062108
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211464055|gb|FL062026.1|FL062026
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32919410|gb|CF024222.1|CF024222
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211464049|gb|FL062020.1|FL062020
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33102006|gb|CF061966.1|CF061966
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211045587|gb|FL062119.1|FL062119
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCA
EST: gi|211474170|gb|FL062078.1|FL062078
EST:     TATTGACAATGGCCCCC-GATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32908718|gb|CF013531.1|CF013531
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33100953|gb|CF060913.1|CF060913
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211223693|gb|FL399500.1|FL399500
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32945519|gb|CF050338.1|CF050338
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211279000|gb|FL407011.1|FL407011
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211469118|gb|FL062056.1|FL062056
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGGGCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31360502|gb|CD444859.1|CD444859
EST:     ATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: ATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32933270|gb|CF038082.1|CF038082
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211476688|gb|FL062089.1|FL062089
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211466586|gb|FL062037.1|FL062037
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32944897|gb|CF049716.1|CF049716
EST:     ATTGACAATGGNNNNNNNGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: ATTGACAATGG-CCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211471640|gb|FL062065.1|FL062065
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAG-TGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211332062|gb|FL381794.1|FL381794
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GGAGTTCTATTA-TCCCCAGTGAGAGAACCTATTCAGAGGAGATGATCCAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCC-AGTGAGAGAACCTATCCAGAGGAGATGATCCAA
EST: gi|211461534|gb|FL062016.1|FL062016
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32846162|gb|CD985843.1|CD985843
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211045584|gb|FL062116.1|FL062116
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211132918|gb|FL391883.1|FL391883
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCCAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32933397|gb|CF038209.1|CF038209
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     TATTGACAATGGGCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33100729|gb|CF060689.1|CF060689
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211172669|gb|FL375066.1|FL375066
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAAGT-CTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGANTC-A
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAA-GTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGA-TCCA
EST: gi|211464053|gb|FL062024.1|FL062024
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211439866|gb|FL422480.1|FL422480
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCC
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCC
EST: gi|32942779|gb|CF047598.1|CF047598
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211427007|gb|FL427232.1|FL427232
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|13389395|gb|BG462701.1|BG462701
EST:     TATTGACAATGGCCCGCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211332674|gb|FL416300.1|FL416300
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211466587|gb|FL062038.1|FL062038
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAA
EST: gi|32931129|gb|CF035941.1|CF035941
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211466593|gb|FL062044.1|FL062044
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211448189|gb|FL410292.1|FL410292
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAAGT-CTATTAATCCCA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAA-GTTCTATTAATCCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 714

CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 783

CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 429

CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 751

CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                      ctctgat  putative branch site (score: 751)
                                            ttttgtt  CT-rich tract
                 tttaaagtttgtaat  TA-rich tract