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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 6
gtaagtaatttct-ggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgat-tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
||||||  || ||   |||| |  | ||||| |  ||   |||| || ||||||||||| |              ||||  ||||  |||      | |||  ||||   ||   ||  |  | | | | | |||| ||||  || ||| ||| || |||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||
gtaagtttttgctcaattcaggtgcactgctatggaa-attcatagttaagtgcatgttct--------------tttatcagtacggat-----ggtggc--taaacttatatttctcttctgataatat-taataatgtcttccgatgtttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAACAGGGATATCAACCATTGATGTCATGAACTCCATTGCTCGAGGCCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA-
                                                                               |  || |   |  |  |  |   | |||      ||   |||||    ||| |||  || | | |||    |  | |||||||||| || || || ||||||||||||||||||||||||||||| || || || ||||| ||||||||||| ||||| || |||||| | || ||||| 
------------------------------------------------------------------------------tatataatttcttctggggaggtctgaatatgcatgtttttctttgcc-tttttaaatattttccctg----taattcaggAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                 ||| |    ||     | | || |  |  |  |    ||  |  ||| ||  || ||||     |      || |  ||  | | |||  |||||||||| || ||||| |||||| ||||||| || ||||||||||| || ||||| ||||| || |||||||| ||||| || |||||| | || |||||
-----------------------------------------------------------------gtatttaacttcctttgcagtgttctacaattg----tatgttgatgtgtgaatttttacccccta-----atatcttcccaatatgt--cagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGACTGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                            || ||  |||  ||     | || ||  |||   |  ||  ||||||    ||| |||| || | | |      |  | |||||||||| || || || ||||||||||||||||| ||||||||||| || || |||||||| ||||||||||| ||||| || |||||| | || |||||
---------------------------------------------------------------------------gtataaa-atttcttctggggaggtat-gaatatgtatgtttatctttgccttttttaat-atatccccca----taattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 7
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatga--gtccatctttaaagtttgtaatcatg-tactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                                  | |  |||  || || |  ||  |  | ||   ||  || | | |  ||| |   | |  ||   |     | || |||||||||| || ||||| ||||||||||||||||| ||||||||||| || || || ||||| || |||||||| ||||| || |||||| | || |||||
-------------------------------------------------------------------------------gtatttaaattcctttgcagtgttctacaattgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                 ||     | |||||   | |||    || |     ||   || |   |   ||     | |   | ||||  |  ||| |  |||   | ||||||||||||| ||||||||||||||||||||||| || |||||||| || || || ||||||||||||||||| |||||||| || ||  | || || ||
-----------------------------------------------------------------gtgagctgctttagcc-tcttgtcacataattactatctcataataaaacacac----aga---tataattctagacttttgtttc--tccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgatt-ttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                    ||  |  ||    |  |  | | | | |     | ||   || ||    ||||     ||||  |||  | |     |||  || ||  ||||||||| || || |||||||| |||||||| || || |||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||
--------------------------------------------------------------------gtgagcattgactgcctcaagtcaattgtactctgaagagaaggaaaaaatct-----gttttaaattgtttcggtcgataatttttatagGAAGTTCAATCAACCCCAGTGAAAGAACCTACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCCATTGCTCGTGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttg-cagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                                   || |  |   || |  |||  |  |||     |  | || |||||  | ||| |     |||  |||  ||||    |  || | |||  ||||||||| || || |||||||| ||||||||||| || |||||||| || || || ||||| ||||| ||||| ||||| |||||||||||||| || ||
----------------------------------------------------------------gtgagcaactaagaggacaattattccattgagatctctgaagcaatgt-ttcattt-----gttcttaaaaatgtcaattccttatattgatagGAAGTTCAATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGATACAGACAGGCATATCGACCATCGATGTCATGAATTCCATTGCTCGTGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggca-ttaaatcaatgagtccatctt--taaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                             |  |||| |  | |    |  || ||||| |||| |   |  ||    || || |  || ||       | | |||| |  |  ||    | | |   |||||||||||| || |||||||||||||||||||| || |||||||| ||||| ||||| || || |||||||| ||||||||||||||||| || |||||
-------------------------------------------------------------gtcagtaat--gctaggaagataatgatttattaccaaaagctagggaaaagattttatgttatctggatatataataaactcttccttgtctttcatagGAAGTTCTATCAACCCCAGTGAGAGAACCTATCCTGAAGAGATGATACAAACAGGGATTTCTACTATTGATGTCATGAACTCCATTGCTCGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                                 |||  | || | |   || |||   ||||    |    | | |    | | | |  |    | |   ||     | |   |||| || | | || |  |||| |  |||| ||||| || ||||| ||||||||||| ||||| || ||||||||||| || ||||| || || |||||||| ||||| || |||||  | || || ||
-------------------------------------------------gtgagttttttaggaggtggtattatttaaccattaaaactcacct-ctgaactttagagtttacaacagtggcagatcctgtactctttttctttcctttttt--cagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                               | |  ||| |  | |   || ||  || |     |||   || |  | || | | || |  || | |  ||  |||   |   |   || |||||      | ||   |||| |||| | | | ||||   ||| || || || |||||| | || || || ||||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || |||||
------------------------------gtgct-tgcactcgctttggtacaccttataatcggtaactggctgcaaaattttggaatattttgtgctat-gaattgctatat---tcgttaaa-----cagtc---tact-tgatgtggcttcagGTGCTTCAATCAACCCTAGTGAGCGGACATACCCTGAGGAGATGATTCAAACTGGAATATCTACCATTGATGTCATGAACTCTATTGCTCGAGGTCAAAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                    | ||    |  |||| | | ||   |    | |   ||      ||  | ||| | | | |   ||             |   ||||     ||       | ||  | | ||||  | || || ||| |  |  ||||    || || ||||| |||||| | || || |||||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| ||||||||
--------------------gtacttccccttacactacccacattc---tactcatt------agccgcaggctcttggaacctt-------------cggaaaattttgaag-------taaatatgtttaatattatattc-gatctgatcacagGTGCATCGATCAATCCTAGTGAGCGGACGTACCCAGAGGAGATGATTCAAACAGGAATATCTACGATTGATGTCATGAACTCTATTGCTCGAGGGCAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102148|gb|CF062108.1|CF062108
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211182799|gb|FL070450.1|FL070450
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAAGTTTCTATTA-TCC-AGTGAGAGAACCTATCCAGAGGAGATGATCCA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAA-GTT-CTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCA
EST: gi|33102006|gb|CF061966.1|CF061966
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32908718|gb|CF013531.1|CF013531
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33100953|gb|CF060913.1|CF060913
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211182798|gb|FL070449.1|FL070449
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32945519|gb|CF050338.1|CF050338
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31360502|gb|CD444859.1|CD444859
EST:     ATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: ATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32933270|gb|CF038082.1|CF038082
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32944897|gb|CF049716.1|CF049716
EST:     ATTGACAATGGNNNNNNNGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: ATTGACAATGG-CCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     TATTGACAATGGGCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32846162|gb|CD985843.1|CD985843
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32933397|gb|CF038209.1|CF038209
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33100729|gb|CF060689.1|CF060689
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCA
EST: gi|32942779|gb|CF047598.1|CF047598
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|13389395|gb|BG462701.1|BG462701
EST:     TATTGACAATGGCCCGCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32931129|gb|CF035941.1|CF035941
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211466593|gb|FL062044.1|FL062044
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA
                                      ctctgat  putative branch site (score: 4)
                                            ttttgtt  CT-rich tract
                 tttaaagtttgtaat  TA-rich tract