1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgtgttgtgacttaattttagctttccttaatattgcatctgacataatcctagctactaatatgtcttctgctggcaatgctctgatcatttttgtagAAGGACCATCAACAAAGGAATTGGTGTTGACAATATGCACTATCTAAATGATGGCCTATGGAAGGTACTCCTACATGGGTTTCCCTGTCGACCTCATTGT
species | Zea mays |
transcript | GRMZM2G180990_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACAT AAGGGCCATCAACAAAGGAATTGGTGTTGACAATATGCACTATCEST: gi|60337104|gb|DN204077.1|DN204077
genomic: AAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACATgtaagtttca ... atttttgtagAAGGACCATCAACAAAGGAATTGGTGTTGACAATATGCACTATC
EST: AAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACAT AAGGACCATCAACAAAGGAATTGGTGTTGACAATATGCACTATCTAAATGA
genomic: AAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACATgtaagtttca ... atttttgtagAAGGACCATCAACAAAGGAATTGGTGTTGACAATATGCACTATCTAAATGA
ataatcctagctactaatatgtcttctgctggcaatgctctgatcatttttgtagAAGGACCATCAACAAAGGAATTGGTGTTGACAATATGCACTATCTAAATGATGGCCTATGGAAGGTACTCCTACATGGGTTTCCCTGTCGACCTCATTGT
tcattttt CT-rich tract
tactaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgttgtgacttaattttagctttccttaatattgcatctgacataatcctagctactaatatgtcttctgctggcaatgctctgatcatttttgtagAAGGACCATCAACAAAGGAATTGGTGTTGACAATATGCACTATCTAAATGATGGCCTATGGAAGGTACTCCTACATGGGTTTCCCTGTCGACCTCATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG