1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagattgcctacttataatatatggctattctttttgcatcgtttgttacgttcgtttatttcttatccttggcaattttcatctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGACGTTGAGGCAGAG
species | Zea mays |
transcript | GRMZM2G179459_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACG GCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATEST: gi|148996112|gb|EE035378.2|EE035378
genomic: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACGgtgagattgc ... ctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGAT
EST: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACG GCGGGAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGACEST: gi|149013869|gb|EE043354.2|EE043354
genomic: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACGgtgagattgc ... ctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGAC
EST: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACG GCGGAAGCAGAAAAGTTATTCCCTCTGAGATTAGCTGCTATACTTGATEST: gi|149085767|gb|EE175287.2|EE175287
genomic: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACGgtgagattgc ... ctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGAT
EST: TGTCGAGTCTNCA-CAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACG GCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGEST: gi|148983017|gb|EE028919.2|EE028919
genomic: TGTCGAGTCT-CAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACGgtgagattgc ... ctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATG
EST: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACG GCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGACEST: gi|148951274|gb|EC896976.2|EC896976
genomic: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACGgtgagattgc ... ctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGAC
EST: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACG GCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGAT
genomic: CTGTCGAGTCTCAACAGCAACGAGTGACCCTTCAGAGGCTGGTTGGCACGgtgagattgc ... ctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGAT
atcgtttgttacgttcgtttatttcttatccttggcaattttcatctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGACGTTGAGGCAGAG
ttttcatctc CT-rich tract
tttatttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattgcctacttataatatatggctattctttttgcatcgtttgttacgttcgtttatttcttatccttggcaattttcatctcgttgaagGCGGAAGCAGAAAAGTTATTCCATCTGAGATTAGCTGCTATACTTGATGACGTTGAGGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT