1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaatttttaactttctctcccacttaggctcagtttacgtggttctatttcatacatccaaattgatttccatatataatttgaaaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTGAAAGAACTGCAAGGGAACATAGGCAACCATGGGCTTTTTGGGTGAACT
species | Zea mays |
transcript | GRMZM2G179097_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTEST: gi|18163384|gb|BM333223.1|BM333223
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTEST: gi|60398387|gb|DN231203.1|DN231203
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTEST: gi|18170161|gb|BM340001.1|BM340001
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: TCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTEST: gi|32930695|gb|CF035507.1|CF035507
genomic: TCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAAGTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTEST: gi|4646970|gb|AI622045.1|AI622045
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: AAAGAACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTEST: gi|67026080|gb|CO454829.1|CO454829
genomic: AAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTEST: gi|18172736|gb|BM348124.1|BM348124
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
tggttctatttcatacatccaaattgatttccatatataatttgaaaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTGAAAGAACTGCAAGGGAACATAGGCAACCATGGGCTTTTTGGGTGAACT
aattgat putative branch site (score: 4)
aaattgatttccatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttttaactttctctcccacttaggctcagtttacgtggttctatttcatacatccaaattgatttccatatataatttgaaaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTTGAAAGAACTGCAAGGGAACATAGGCAACCATGGGCTTTTTGGGTGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC