1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttcgcattgctgctgtatcttattgcacaatttgcttgtattcgaagttccacaagtgtccattattgtatcttactgttggaaatatcttgtcgacagGTATAATTGCAGGGCTGTGCCAACCTTAGGAAATGCTGGTGATGGTCAATTATGCAGCACCTCAGAAACACTAGTGGATGTTGAAAATAAAAATGGAGAT
species | Zea mays |
transcript | GRMZM2G179024_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAAATGATAGAAGAACACTGAACCATTCAACTTCCTCTGCGTTTTCCTT GTATAATTGCAGGGCTGTGC-AACCTTAGTAAATGCTGGTGATGGTCAATTEST: gi|21987631|gb|BQ779159.1|BQ779159
genomic: AAAAATGATAGAAGAACACTGAACCATTCAACTTCCTCTGCGTTTTCCTTgtaagtgcac ... ttgtcgacagGTATAATTGCAGGGCTGTGCCAACCTTAGGAAATGCTGGTGATGGTCAATT
EST: AAAAATGATAGAAGAACACTGAACCATTCAACTTCCTCTGCGTTTTCCTT GTATAATTGCAGGGCTGTGCCAACCTTAGGAAATGCTGGTGATGGTCAATT
genomic: AAAAATGATAGAAGAACACTGAACCATTCAACTTCCTCTGCGTTTTCCTTgtaagtgcac ... ttgtcgacagGTATAATTGCAGGGCTGTGCCAACCTTAGGAAATGCTGGTGATGGTCAATT
aagttccacaagtgtccattattgtatcttactgttggaaatatcttgtcgacagGTATAATTGCAGGGCTGTGCCAACCTTAGGAAATGCTGGTGATGGTCAATTATGCAGCACCTCAGAAACACTAGTGGATGTTGAAAATAAAAATGGAGAT
atcttac putative branch site (score: 38)
tcttgtc putative PPT
attattgtatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcattgctgctgtatcttattgcacaatttgcttgtattcgaagttccacaagtgtccattattgtatcttactgttggaaatatcttgtcgacagGTATAATTGCAGGGCTGTGCCAACCTTAGGAAATGCTGGTGATGGTCAATTATGCAGCACCTCAGAAACACTAGTGGATGTTGAAAATAAAAATGGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - -gctgctg
- - - - - - - - - - - -ttgcaca
- - - - - - - - - - - - - - - - -tgcttgt