1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtactaaacatattggatttctactgtccttgtcttgatgtgttttttttttgtcaatttgggatcttatatggaattaacccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGGCCTTACCATCGGAGCTCTATCATTCGTCCTAGAACCAAGCCCGAAGAC
species | Zea mays |
transcript | GRMZM2G178859_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|94479184|gb|EB708142.1|EB708142
genomic: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: TTGGGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|211061642|gb|FL451761.1|FL451761
genomic: TTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: CATGCTACCTTTGGGGTAATTT-CGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|71443477|gb|DR824527.1|DR824527
genomic: CATGCTACCTTTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: GGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|211061639|gb|FL451758.1|FL451758
genomic: GGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|211061640|gb|FL451759.1|FL451759
genomic: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|23199722|gb|BU582287.1|BU582287
genomic: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|211061641|gb|FL451760.1|FL451760
genomic: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGEST: gi|71322419|gb|DR797880.1|DR797880
genomic: GCTAAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
EST: AAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACT GGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
genomic: AAGAAATTGTCTGTACATGCTACCTTTGGGGTTATTTGCGTACAACTgtaagtacta ... cccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAG
tgatgtgttttttttttgtcaatttgggatcttatatggaattaacccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGGCCTTACCATCGGAGCTCTATCATTCGTCCTAGAACCAAGCCCGAAGAC
aattaac putative branch site (score: 61)
ccctt CT-rich tract
ttttttttttgtcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactaaacatattggatttctactgtccttgtcttgatgtgttttttttttgtcaatttgggatcttatatggaattaacccttggtagGGGGGCTCACATCCGAGTGGTTCAGTTTTGAAGCTTCACTCCTAACATTAGGCCTTACCATCGGAGCTCTATCATTCGTCCTAGAACCAAGCCCGAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA