1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgtctgttacttttgcaacatggagcactttgatatgctcaagttgtttgttaatgcacaaataagttataatctcattctcatgtacctgatgtttcagATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACCAGGGGTTCAGTTCGCTCTCCGTTGGCCCAGTGCCTACTTATTCGCTACA
species | Zea mays |
transcript | GRMZM2G178618_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAA ATTAGACAAAATGATCGEST: gi|148956209|gb|EC901999.2|EC901999
genomic: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAAgtgagttaaa ... gatgtttcagATTAGACAAAATGATCG
EST: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAA ATTAGAACAAA-TGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACEST: gi|22490147|gb|BU050070.1|BU050070
genomic: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAAgtgagttaaa ... gatgtttcagATTAGA-CAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGAC
EST: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAA ATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACCEST: gi|148931355|gb|EC874250.2|EC874250
genomic: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAAgtgagttaaa ... gatgtttcagATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACC
EST: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAA ATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACCEST: gi|87153597|gb|DY398386.1|DY398386
genomic: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAAgtgagttaaa ... gatgtttcagATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACC
EST: AGTCAAGAGCTGCTCTTGTGCAATATCATGCCCTTGCTCTTCTTCACCAA ATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACCEST: gi|60396049|gb|DN228919.1|DN228919
genomic: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAAgtgagttaaa ... gatgtttcagATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACC
EST: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAA ATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACC
genomic: AGTCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAAgtgagttaaa ... gatgtttcagATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACC
gtttgttaatgcacaaataagttataatctcattctcatgtacctgatgtttcagATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACCAGGGGTTCAGTTCGCTCTCCGTTGGCCCAGTGCCTACTTATTCGCTACA
acaaataagttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctgttacttttgcaacatggagcactttgatatgctcaagttgtttgttaatgcacaaataagttataatctcattctcatgtacctgatgtttcagATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACCAGGGGTTCAGTTCGCTCTCCGTTGGCCCAGTGCCTACTTATTCGCTACA
- - tgttact
- - - - - - - - -acatgga
- - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - aatgcac