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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgacagtttattatcggaaagcagtcacagctaaacatttcatctgcataggctacctcttgagtgataggtggctttgctttttgaaccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTGGCAAGGTGATTGCTATCAGTGACGTCACAGGCGCCGTCAAAAACGTCG

Basic information

species Zea mays
transcript GRMZM2G178415_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g58040.1 (Oryza sativa), 3'ss of exon 6
--------cttgacagtttattatcggaaagcagtcacagctaaacatttcatctgcataggctacctcttgagtgataggtggctttgctttttgaaccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTGGCAAGGTGATTGCTATCAGTGACGTCACAGGCGCCGTCAAAAACGTCG
         |       ||    |   |||  ||  | |||| |||||||   ||||| |||||   ||     |||    |    ||||  |       |||| |||||||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| || || ||||| |||  | 
ctttatgtttacttgagttgaccttacaaattaggga-agctgaacatttttcctgcaaaggctgtgtcacagatgaccaatta--ttgccctgg-----cttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTGGCAAGGTGATTGCCATCAGTGATGTCACTGGAGCTGTCAAGAACAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148981458|gb|EE027657.2|EE027657
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGGTCCTGGGCAGCTCAGCTGATAAGTGAAAGC-GG
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAA-GCCGG
EST: gi|148934217|gb|EC878238.2|EC878238
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|149082772|gb|EE171995.2|EE171995
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|60354014|gb|DN220987.1|DN220987
EST:     TGCTTGCAGAGCACGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|87152935|gb|DY397724.1|DY397724
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTC
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTC
EST: gi|19436213|gb|BM952623.1|BM952623
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|148940231|gb|EC885000.2|EC885000
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|211300259|gb|FL012334.1|FL012334
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|78092010|gb|DV520384.1|DV520384
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|13125987|gb|BG316662.1|BG316662
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|78089717|gb|DV518091.1|DV518091
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|91867926|gb|EB399854.1|EB399854
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|149101283|gb|EE187396.2|EE187396
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|87156586|gb|DY401375.1|DY401375
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|149110227|gb|EE190296.2|EE190296
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|19351121|gb|BM895653.1|BM895653
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|26559718|gb|CA831953.1|CA831953
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: gi|60357158|gb|DN224131.1|DN224131
EST:     TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG                         GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcataggctacctcttgagtgataggtggctttgctttttgaaccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTGGCAAGGTGATTGCTATCAGTGACGTCACAGGCGCCGTCAAAAACGTCG
                                             ccctttgc  CT-rich tract
                                     tttttgaa  TA-rich tract