Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgccttctgtttccttgccctctaccactgtagcacatggtcgtcgtccagggttcagctccagaatatcgactgtatcgtgatcgtgattagtctgcacgatatatatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTGTTCAACCAAGTGGTGTTCAGTAACCACATGTGCTCTTTCCAGTAGGGCG

Basic information

species Zea mays
transcript GRMZM2G178182_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178182_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os09g33580.1 (Oryza sativa), 3'ss of exon 6
----gtctgcct-tctgtttccttgccctctaccactgtagcacatggtcgtcgtccagggt-tcagctccagaatatcgactgtatcgtgatcgtgattagtctgcacgatatatatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTGTTCAACCAAGTGGTGTTCAGTAACCACATGTGCTCTTTCCAGTAGGGCG
    || ||  | | ||   |  ||  |  | |  |  ||  | ||      | | |||| | |||  |||| |  |  |    || |          | || |||||   |  |  | | ||||||   ||| |||||||   |||||||||||| | |||||||| ||| |||||||| ||||||||| ||| |||  |||||||||||||||||||||| |
gttggtttgtttctttggccctctgttcatttcttccctatgagatatgatccattcaggttctcaattccaaatcactgttcatagc----------tgaggctgcatacttaactttttcagGACAATGGCAGCTACATCATGCAAACAGTAGGGGAGCCAAGGCAAGAACTGTTCAATCAAGTGGTGCTCAATAATTACATGTGCTCTTTCCAGTAGGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76280840|gb|DV020408.1|DV020408
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|91874701|gb|EB404658.1|EB404658
EST:     AGCTCCACGGCGATGGCGGGGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|78113319|gb|DV531711.1|DV531711
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|60340466|gb|DN207439.1|DN207439
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|71756803|gb|DR954740.1|DR954740
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagaatatcgactgtatcgtgatcgtgattagtctgcacgatatatatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTGTTCAACCAAGTGGTGTTCAGTAACCACATGTGCTCTTTCCAGTAGGGCG
                                              tatctcc  CT-rich tract
                                         atatatatct  TA-rich tract