Sequence
atgc intronic sequence ATGC exonic sequencegttctccccgctgccttctccgctccatatattgtctgcactattatgcctcatgctaatatcaatgtccattacttgacacagGCTGGAGAAACAATCGAGCACAACCAGCTTCATACCCAAGTCGATTACAGAGCGTTTTACCCGTTGAGCTTCCACTCGTTTCCAGAACAATGTGACATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G177914_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g12710.1 (Oryza sativa), 3'ss of exon 7
----gttctccccgctgccttctccgctccatatattgtctgcactattatgcctcatgctaatatcaatgtccattacttgacacagGCTGGAGAAACAATCGAGCACAACCAGCTTCATACCCAAGTCGATTACAGAGCGTTTTACCCGTTGAGCTTCCACTCGTTTCCAGAACAATGTG-ACATTT
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gttcttacttcctgctgccttcccc-ttgcacatgttgcgtgcatgtttacatgtaatcctaa---cagtattcgtttcttgacgcagGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGA-GCTTCACTCATGTTATGGACAGAA
upper sequence: GRMZM2G177914_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g25110.1 (Oryza sativa), 3'ss of exon 5
--------------------gttctccccgctgccttctccgctccatatattgtctgcactattatgcctcatgctaatatcaatgtccattacttgacacagGCTGGAGAAACAATCGAGCACAACCAGCTTCATACCCAAGTCGATTACAGAGCGTTTTACCCGTTGAGCTTCCACTCGTTTCCAGAACAATGTGACATTT--
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tagaagagattgcaaggttcttacttcctgctgccttcccc-ttgcacatgttgcgagcatgtttacatgtaatcctaa---cagtattcgtttcttgacacagGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGATGAGCCGTG--TCATGGACAGAAACTTTGAAGGCTTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71761757|gb|DR959694.1|DR959694EST: ATCGAAACAAGTTCAGAACAGATAATGAAATCTGTGGAAGAGATTGAAAG GCTGGAGAAACAATCGAGCACAACCAGCTTCATACCCAAGTCGATTACAGA
genomic: ATCGAAACAAGTTCAGAACAGATAATGAAATCTGTGGAAGAGATTGAAAGgttctccccg ... cttgacacagGCTGGAGAAACAATCGAGCACAACCAGCTTCATACCCAAGTCGATTACAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgtctgcactattatgcctcatgctaatatcaatgtccattacttgacacagGCTGGAGAAACAATCGAGCACAACCAGCTTCATACCCAAGTCGATTACAGAGCGTTTTACCCGTTGAGCTTCCACTCGTTTCCAGAACAATGTGACATTT
taatatcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctccccgctgccttctccgctccatatattgtctgcactattatgcctcatgctaatatcaatgtccattacttgacacagGCTGGAGAAACAATCGAGCACAACCAGCTTCATACCCAAGTCGATTACAGAGCGTTTTACCCGTTGAGCTTCCACTCGTTTCCAGAACAATGTGACATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT