1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cagtaaaaaggtaaaacaaattttaatttgggacggagggagtatttagtatcaagcagccctttcatcttgagctaaacatgattttataggtacccagGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAG
species | Zea mays |
transcript | GRMZM2G177912_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTAEST: gi|148969238|gb|EE019992.2|EE019992
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... aggtacccagGT-C--A--TC-T--AAACAGCTCTATGAAGACAATGAGTA
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACEST: gi|67016433|gb|CO445182.1|CO445182
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... aggtacccagGT-C--A--TC-T--AAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTATEST: gi|76288290|gb|DV027858.1|DV027858
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... aggtacccagGT-C--A--TC-T--AAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAAC
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... aggtacccagGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAAC
ttagtatcaagcagccctttcatcttgagctaaacatgattttataggtacccagGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAG
agctaaa putative branch site (score: 9)
taaacatgattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtaaaaaggtaaaacaaattttaatttgggacggagggagtatttagtatcaagcagccctttcatcttgagctaaacatgattttataggtacccagGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTCGCGAGAAG
- gtaaaaag
- - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - caagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatt