1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggtgtttaacagttaatcgttgccatttgtcctacttctccctttgttttctccgaactgaaggtttattctacttaacatcgaaattctcaaattttgtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCTCGCCTGGTTTATGTCTCGAGAGAAAAGAGGCCAGGTTATAACCATCACA
species | Zea mays |
transcript | GRMZM2G177631_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGCGATCCATCCTGGAATGATTCAG GTATTCCTTGGCCAAAGTGGTGGTCGTGATGTGGAAGGAAATGAGTTGCCTEST: gi|91873599|gb|EB403556.1|EB403556
genomic: ACGCGAT-CATCCTGGAATGATTCAGgtaggtgttt ... gtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCT
EST: CGATCATCCTGGAATGATTCAG GTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCTEST: gi|211336415|gb|FL383134.1|FL383134
genomic: CGATCATCCTGGAATGATTCAGgtaggtgttt ... gtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCT
EST: GAAGCCCCTGGCCTGGAAACAACGTACGCGATCATCCTGGAATGATTCAG GTATTCCTTGGCCAAAGTGGTGGTCGTGATGTGGAAGGAAATGAGTTGCCTEST: gi|211101700|gb|FL470685.1|FL470685
genomic: GAAGCCCCTGGCCTGGAAACAACGTACGCGATCATCCTGGAATGATTCAGgtaggtgttt ... gtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCT
EST: GAAGCCCCTGGCCTGGAAACAACGTACGCGATCATCCTGGAATGATTCAG GTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCTEST: gi|32849039|gb|CD988720.1|CD988720
genomic: GAAGCCCCTGGCCTGGAAACAACGTACGCGATCATCCTGGAATGATTCAGgtaggtgttt ... gtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCT
EST: ACGCGATCATCCTGGAATGATTCAG GTATTCCTTGGCCAAAGTGGTGGTCGTGATGTGGAAGGAAATGAGTTGCCTEST: gi|32929817|gb|CF034629.1|CF034629
genomic: ACGCGATCATCCTGGAATGATTCAGgtaggtgttt ... gtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCT
EST: GATCATCCTGGAATGATTCAG GTATTCCTTGGCCAAAGTGGTGGTCGCGATGTGGAAGGAAATGAGTTGCCT
genomic: GATCATCCTGGAATGATTCAGgtaggtgttt ... gtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCT
cgaactgaaggtttattctacttaacatcgaaattctcaaattttgtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCTCGCCTGGTTTATGTCTCGAGAGAAAAGAGGCCAGGTTATAACCATCACA
acttaac putative branch site (score: 397)
aaattctcaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgtttaacagttaatcgttgccatttgtcctacttctccctttgttttctccgaactgaaggtttattctacttaacatcgaaattctcaaattttgtgtcaacagGTATTCCTTGGCCAAAGTGGCGGTCGTGATGTGGAAGGAAATGAGTTGCCTCGCCTGGTTTATGTCTCGAGAGAAAAGAGGCCAGGTTATAACCATCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG