1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcttccctgaaagaaactgtctctcaaatgcattaaacaatcactacacaattgctatgtttgtgtgctatgaagctctaaactacggaacagaatagatttgcagtttgctatcagtcagatattccgctcttgtacaaccatcatggggattttttttttcccgactgacttcatacctacgcagGTGGCCTTTCATATCTGGGTTCACCTTGACATGGGTGCAAAGCACGATTTTAGTGGGCTGACCCCCGAGAAATGGCTGCTTGGCGCTGTTGGTGCGGTGA
species | Zea mays |
transcript | GRMZM2G176506_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATCTCCTATCCGAGATGCTTCGGGCAAGGTTCGCTTACATCTTTCTCAG GTGGCCTTTCATATCTGGGTTCACCTTGACATGGGTGCAAAGCACGATTTTEST: gi|60396027|gb|DN228897.1|DN228897
genomic: TATCTCCTATCCGAGATGCTTCGGGCAAGGTTCGCTTACATCTTTCTCAGgtcttccctg ... acctacgcagGTGGCCTTTCATATCTGGGTTCACCTTGACATGGGTGCAAAGCACGATTTT
EST: TATCTCCTATCCGAGATGCTTCGGGCAAGGTTCGCTTACATCTTTCTCAG GTGGCCTTTCATATCTGGGTTCACCTTGACATGGGTGCAAAGCACGATTTT
genomic: TATCTCCTATCCGAGATGCTTCGGGCAAGGTTCGCTTACATCTTTCTCAGgtcttccctg ... acctacgcagGTGGCCTTTCATATCTGGGTTCACCTTGACATGGGTGCAAAGCACGATTTT
ttgtacaaccatcatggggattttttttttcccgactgacttcatacctacgcagGTGGCCTTTCATATCTGGGTTCACCTTGACATGGGTGCAAAGCACGATTTTAGTGGGCTGACCCCCGAGAAATGGCTGCTTGGCGCTGTTGGTGCGGTGA
gactgac putative branch site (score: 16)
atttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttccctgaaagaaactgtctctcaaatgcattaaacaatcactacacaattgctatgtttgtgtgctatgaagctctaaactacggaacagaatagatttgcagtttgctatcagtcagatattccgctcttgtacaaccatcatggggattttttttttcccgactgacttcatacctacgcagGTGGCCTTTCATATCTGGGTTCACCTTGACATGGGTGCAAAGCACGATTTTAGTGGGCTGACCCCCGAGAAATGGCTGCTTGGCGCTGTTGGTGCGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT