1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgatatattttttactctgttttgtctttttatgtactatatgatatatgactttatatttatgagatctgataatcaaatgtagAGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATTAGTATGCACTGATCTGGCAGCTAGAGGCCTGGACCTGGATGTTGACCAT
species | Zea mays |
transcript | GRMZM2G175867_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCATATATCCACTGTTAA-CTATCATGGAGAGGTTCCAGCTGAAGAGAG AGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATTEST: gi|33942668|gb|CF349268.1|CF349268
genomic: ATCATATATCCACTGTTAAACTATCATGGAGAGGTTCCAGCTGAAGAGAGgtttgatata ... tcaaatgtagAGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATT
EST: ATCATATATCCACTGTTAA-CTATCATGGAGAGGTTCCAGCTGAAGAGAG AGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATTEST: gi|6827364|gb|AW331007.1|AW331007
genomic: ATCATATATCCACTGTTAAACTATCATGGAGAGGTTCCAGCTGAAGAGAGgtttgatata ... tcaaatgtagAGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATT
EST: ATCATATATCCACTGTT-AACTATCATGGAGAGGTTCCAGCTGAAGAGAG AGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATT
genomic: ATCATATATCCACTGTTAAACTATCATGGAGAGGTTCCAGCTGAAGAGAGgtttgatata ... tcaaatgtagAGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATT
tatgtactatatgatatatgactttatatttatgagatctgataatcaaatgtagAGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATTAGTATGCACTGATCTGGCAGCTAGAGGCCTGGACCTGGATGTTGACCAT
atctgat putative branch site (score: 66)
actatatgatatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatatattttttactctgttttgtctttttatgtactatatgatatatgactttatatttatgagatctgataatcaaatgtagAGTTGAGAACCTGAACAAGTTCCGCAATGAAGAGGGGGATTGTCCAACATTAGTATGCACTGATCTGGCAGCTAGAGGCCTGGACCTGGATGTTGACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT