1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattctaaagaaaggaaaccccttattggtcatgtattttgtctattttgatggtgttcgctgttttttctattcttctttatcttgcatttctgttttattttcgtcaagcatcattgtgttaacaatccttctttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGATGAGAGGAGATCAAGGAGTCTTAGCTACAGCAGGAGCGCAAGCCCTAGG
species | Zea mays |
transcript | GRMZM2G175419_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|101390994|gb|EB817433.1|EB817433
genomic: AGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: GGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|101391570|gb|EB817721.1|EB817721
genomic: GGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|78109291|gb|DV527707.1|DV527707
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCCAGGGGTGGACGCCGAGACCGTGAEST: gi|60355064|gb|DN222037.1|DN222037
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|31360494|gb|CD444851.1|CD444851
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|40336635|gb|CK370705.1|CK370705
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCTATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|31360368|gb|CD444725.1|CD444725
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|76290330|gb|DV029898.1|DV029898
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|61118470|gb|DN559431.1|DN559431
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|60356194|gb|DN223167.1|DN223167
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|24767689|gb|CA402831.1|CA402831
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: GCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|76931467|gb|DV172734.1|DV172734
genomic: GCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: ACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|67025176|gb|CO453925.1|CO453925
genomic: ACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|94473189|gb|EB702147.1|EB702147
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|61118469|gb|DN559430.1|DN559430
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGAEST: gi|60348050|gb|DN215023.1|DN215023
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
EST: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG CCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
genomic: CGCCGAGGACGGGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtattctaaa ... ttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGA
ttctgttttattttcgtcaagcatcattgtgttaacaatccttctttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGATGAGAGGAGATCAAGGAGTCTTAGCTACAGCAGGAGCGCAAGCCCTAGG
tgttaac putative branch site (score: 2)
tccttctttaccctc putative PPT
ttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattctaaagaaaggaaaccccttattggtcatgtattttgtctattttgatggtgttcgctgttttttctattcttctttatcttgcatttctgttttattttcgtcaagcatcattgtgttaacaatccttctttaccctcagCCGATCCAGATCCCCGTCTGGATCTCCTAGGGGTGGACGCCGAGACCGTGATGAGAGGAGATCAAGGAGTCTTAGCTACAGCAGGAGCGCAAGCCCTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG