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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatctatcattcaaagaaggcaatgattgttcatgatgatggcctttttgtatgcactgctttactcctggaaaaatatttatacatgtgtgatgtacagGTTCCTTGGGGAAATAGTGTCATCCTTGTCGGAGGTAAAACTGAGCCTGCTTCTGATCATTTATCAG

Basic information

species Zea mays
transcript GRMZM2G174830_T01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242321|gb|DT650235.1|DT650235
EST:     CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTG                         GTTCCTTGGGGAAATAGTGTCA
genomic: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctct ... tgatgtacagGTTCCTTGGGGAAATAGTGTCA
EST: gi|78114801|gb|DV533189.1|DV533189
EST:     CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTG                         GTTCCTTGGGGAAATAGTGTCATCCTTTGTCG-AGG-AAAACTGAGCCTGC
genomic: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctct ... tgatgtacagGTTCCTTGGGGAAATAGTGTCATCCTT-GTCGGAGGTAAAACTGAGCCTGC
EST: gi|160481567|gb|EY254399.1|EY254399
EST:     CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTG                         GTTCCTTGGGGAAATAGTGTCATCCTTGTCGGAGGTAAAACTGAGCCTGCT
genomic: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctct ... tgatgtacagGTTCCTTGGGGAAATAGTGTCATCCTTGTCGGAGGTAAAACTGAGCCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtatgcactgctttactcctggaaaaatatttatacatgtgtgatgtacagGTTCCTTGGGGAAATAGTGTCATCCTTGTCGGAGGTAAAACTGAGCCTGCTTCTGATCATTTATCAG
                          aaaaatatttatacat  TA-rich tract