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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactgatgtccagctaatgagaaatttgtgtgatcattttgtagtttctatatgaattttaatagtttctttcattgatgcttaaaattattttgtgcagTCCTCGAGCCGGTTTGATGAACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATG

Basic information

species Zea mays
transcript GRMZM2G174785_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174785_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g08360.1 (Oryza sativa), 3'ss of exon 6
-aactgatgtccagctaatg-agaaatttgtgtgatcattttgtagtttctatatgaattttaatagtttctttcattgatgcttaaaattattttgtgcagTCCTCGAGCCGGTTTGATGAACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATG
  |   ||    |  |  || ||   ||| |||    || ||   |    |||    | |||  ||  ||  || |||||||| |   | | | |  |||||||||| ||||| ||||||||||||||||||||||| ||||| | ||||| | |||||||||||||||||||||| ||||| |||||||| ||||||||||
agaaaaataatgatttcttgcagttttttctgtagaaatctttgtggcattattaatagtttgcta--tttattaattgatgcctgttactgtgtcctgcagTCCTCTAGCCGTTTTGATGAACTACCAGATGAATTAGATCCCATTGGGAAACTTCCAGGATCATTTGATGATGGGGATCCACAAACCACGAACTTATATG

upper sequence: GRMZM2G174785_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G15820.1 (Glycine max), 3'ss of exon 2
aactgatgtccagctaatgagaaatttgtgtgatcattttgtagtttctat--atgaattttaatagtttctttcattgatgcttaaaattattttgtgcagTCCTCGAGCCGGTTTGATGAACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATG---
|| | ||   | |    ||   | | |  |   ||||||| |   ||   |  |  || | ||  |  | |||  | ||||  ||    |    ||   ||||||   || || ||||| || || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | ||||   
aaataattatctgtatgtgcatattcttagaattcattttatttcttgggttcactaaatatatgaagtacttctactgatagtttt--tccccttaaacagTCC---AGTCGCTTTGACGAGCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTG

upper sequence: GRMZM2G174785_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA08G34030.2 (Glycine max), 3'ss of exon 6
aactgatgtccagctaatgagaaatttgtgtgatc-attttgtagtttctat--atgaattttaatagtttctttcattgatgcttaaaattattttgtgcagTCCTCGAGCCGGTTTGATGAACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATG---
|| | ||   | |    ||   | | |  |   |  ||||| |   || | |  |  || ||||  |  |  ||  | ||||  ||    |    ||   ||||||   || || |||||||| || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | ||||   
aaataattatctgtatgtgcttattcttagaattttattttatttcttgtgttcactaaatttatgaagtagttctactgatagttt---tccccttaaacagTCC---AGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTG

upper sequence: GRMZM2G174785_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 5
aactgatgtccagctaatgagaaatttgtgtgatcattttgtagtttctatatgaa---ttttaatagtttctttcattgatgcttaaaattattttgtg-cagTCCTCGAGCCGGTTTGATGAACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATG
      | | ||  ||  |  |  ||| |||  || || || |  ||  || ||     |||  | | ||   |  | |  |   |||  ||||| | |  |||    | ||| | |||||||| || || ||||| |||||||||| ||| |   |||| ||||||||||||||||||||||| ||||| || ||  | ||||
----agtatgcatatatagttatgtttctgttgtctttctgcatcttgcatttgtgatgtttgtacatttgagtatactttttaataaggttattctttctcagCTGCCTAGCAGATTTGATGAGCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctatatgaattttaatagtttctttcattgatgcttaaaattattttgtgcagTCCTCGAGCCGGTTTGATGAACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATG
                                          ttatttt  CT-rich tract
     tatgaattttaatagt  TA-rich tract