Sequence
atgc intronic sequence ATGC exonic sequencegttcgtctatcccccgcccgcgatctccgccacgatcgcgccccctcgtcgctgtgcggcgatttcgctacaggctacagcctatacaggcaagctctgacggtccgctgtttcgccgtgcagCGTCGACGGGCGGCGGTGGCGATGACCACAATCACAACCTGGACCTGTCGCTGGGGAGCTCGGCGGGGAACAAAAGGGGCAGCCTTGACGACGGCGGCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G174784_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g55560.2 (Oryza sativa), 3'ss of exon 7
gttcgtctatcccccgcccgcgatctccgccacgatcgcgc---cccctcgtcgctgtgcggcgatttcgctacaggctacagcctatacaggcaagctctgacggtccgctgtttcgccgtgcagCGTCGACGGGCGGCGGTGGCGATGACCACAATCACAACCTGGACCTGTCGCTGGGGAGCTCGGCGGGGAACAAAAGGGGCAGCCTTGACGACGGCGGCGG------
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-------------------gtggg-tgtgtcatgtgtgcgcttactgctcatggctaggctgttcgtttgtgagttgtgactgctcatccggacaaaatctg-----tcactgttttgcag-
upper sequence: GRMZM2G174784_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g55560.3 (Oryza sativa), 3'ss of exon 7
gttcgtctatcccccgcccgcgatctccgccacgatcgcgc---cccctcgtcgctgtgcggcgatttcgctacaggctacagcctatacaggcaagctctgacggtccgctgtttcgccgtgcagCGTCGACGGGCGGCGGTGGCGATGACCACAATCACAACCTGGACCTGTCGCTGGGGAGCTCGGCGGGGAACAAAAGGGGCAGCCTTGACGACGGCGGCGG---------
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-------------------gtggg-tgtgtcatgtgtgcgcttactgctcatggctaggctgttcgtttgtgagttgtgactgctcatccggacaaaatctg-----tcactgttttgcag--cagCGGCCACGGGTGATGCCGCCGAG---------CACAACCTGGACCTCTCGCTTGGGAGCTCGGCGGGCTCCAAGAGGGGCAACGTTGACGGTGGCGGGGACGACGAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacaggctacagcctatacaggcaagctctgacggtccgctgtttcgccgtgcagCGTCGACGGGCGGCGGTGGCGATGACCACAATCACAACCTGGACCTGTCGCTGGGGAGCTCGGCGGGGAACAAAAGGGGCAGCCTTGACGACGGCGGCGG
ctctgac putative branch site (score: 3)
ctgtttc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcgtctatcccccgcccgcgatctccgccacgatcgcgccccctcgtcgctgtgcggcgatttcgctacaggctacagcctatacaggcaagctctgacggtccgctgtttcgccgtgcagCGTCGACGGGCGGCGGTGGCGATGACCACAATCACAACCTGGACCTGTCGCTGGGGAGCTCGGCGGGGAACAAAAGGGGCAGCCTTGACGACGGCGGCGG
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